G171523


Basic Information

Item Value
gene id G171523
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 32960604 ~ 32965237 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU232179
AATTTTTACTATtggttattttatatatgtgtgcaaTTACTTATACGTATACAATATTAACGTACCCCATATAAAAACAAcatatcaaaaacaaaaaaagcaacttaacaggagagagataattagtaataatcttttttttacttttaatggtagTCAATTTAAAAATAGGTAGTTTCACAAagaattttggagaatttctattggtgcaTCCATCAATGaattttgagtttgagtttttttttttattttgagtttgagattctgtagtaaactaaaaatctacaaaaatggagatgcttcttttttttattagacagtgacgatatgtattaataatgtgtttatatatatatatatatatgtaataataatatatactatacattGGTTTGTAGCtacagttttttaataaaacaaattacaccATCAATTCAGAAtccaaataagaaataagataaatacgacttttaccattttttccctttttagtTCTCCCACACAGTCACctaattttttttcctccagaaaatatacaaaaacaaacatacgctcacacacacacctttctgCTCTTGCCCAGAACCACTCAAACTTTACAACAGCTGctccaaacacaccaaacacactcatcgagtgtgaatgtgtgtatgtatgtgtgtgtgtgtgtttgtttgttttattgccAGTCCCTATTACCAAAGGAAGCCAGCGAGATCAGAGCAGAAGCACTTCAGCTAGCATGCGAAACTTATTGTGTCTCCGCACACGAGTGTGCGTGGGAGGATGTGTATCTCAGAGTGAATGTGTctgagcgtgtgtgtgcgtgagtgtgtgtttgcccAGAAGAGTGTATGTGCGCGCAAGAGCACATGAGCATGTGGGCGTTTGGATATAGGTATTTGCGTAGGTGGGGCGTAGCTGTACATGTGTGGGTGActgagagcatgtgtgtgtgtttgcgctcTTTCTAACTCAGAAACATGGATaatattgtatgtgtgtgtgtgttcgtacatgtgtgtgtgtgtgtgtgtgtgcattaaaTACTCCCATTGGAACAGACACTGGTCCATAGCTGGGGCGCCCGTCAAACCCCTGAGCATTCCAGCGCACCCTGAGCCGTGCTGAATGCCGAGAATTTCAGCTGAAACGTGAAGACAAAAGCCAGGGGGACATTTAAGAGGGTTTTAGCTCAGACAGATCCCTGGGAATCGGTCTCACCCCCCCAACCTCCCCCTCAACTCCTGGCTGCGGTGGGAAAATCCAGCCGCTCAGGCCTGTATTTCAGGTTGAGCTGGAGACGGTTGTAGGCTGCCGCTGAGGGGGCTTTCCTGAAATGGTGCACAATCAGGAGGGGACACAAAGAGACCCACCTGTGGCGCTCTCCGTTCATGTGCTGACAGTCCGCTCGCAGTGGGGAGACGTCTCGCTTGTTGTGGCCCCGCGGGGCCGCTGATATTTTTCATTTCCAGTTCACTGATTAACGCAGTGATGTATTGGAGCCGTGTGTGGTCTGAGATGTACTCCAATGCGGCACTGGAGTGAATGTGGAGGACAAGCAGGGCTGCCTTTGTATGACTGTATGTGTGGTATATGTGTAGCTACTTAAACTCCATGAATGTGAGATGTAAgcagtgccggtgttgtgccgaattcagctcccccgccaggaaaagcaccttcTCTCGGAGCGCATTTCTAAGTAAAGAGAACCCCTTAGGTAACaatttacttggatggtccatttgatggtcagctaacattcaactgaatgtctatcAACTGCAACTTAAtcatatgttgaatgtaaataattcgaaaaatagaacataatcttacacctaaccctaaccttaatcaaccctaaaatcgaaccttaaccctaaacttatcccttaatcaactctaaaatctaaccatGCACTTAACCCTATCCCTAACCTAATCtttaaacctaaccctacaccaaaccctaaccttaccacttaatcaaccctaaaatctaaccctaacccttaccattaatcaaccttaaaatctaatcctacagctaaccctaacctaaacccttaatcaaccctaaaatttaaccctaacctaaacccttaatcaaccctaaaatctaaccctaaccataacccttaatcaaccctaaaatctaaccctaaccttaacccttaatcaaccctaaaatataaccctacaaataaccctaaccttaatccttaatcaactctaaaatctaactctacacctaaccctaaccttaaccattaatcaaccctaaaatctaaccctacacttaaccctaaccctaacttaaactttaaatctaactctaaacccaatgctaaaatgttaGGATTATAGTTGGGGTTggatgtagggttacattcaatagagaatcatttacttccACCTTTTAGTTCAATTGCATTTATTAGACACTcatttgaatgttagttgaatgtctgTTGAGCATTATCAAATGGACCattcaagtaaagtgttacccccCTTAACAGACTAggatttttgttcattttctgcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232179 True 2555 lncRNA 0.40 5 32960604 32965237

Neighbor

gene id symbol gene type direction distance location
c19hxorf36 cunhxorf36 coding downstream 81937 32872118 ~ 32878667 (-)
fundc1 fundc1,LOC107673665,LOC107565940,LOC107695457,LOC107748200 coding downstream 156710 32799174 ~ 32803894 (-)
efhc2 efhc2 coding downstream 162478 32782380 ~ 32798126 (-)
maob maob,mao,LOC107565948,LOC107673703,LOC107748155,LOC107695498,LOC107595828,LOC108266753 coding downstream 215033 32699967 ~ 32745571 (-)
cask caska coding downstream 323427 32408907 ~ 32637177 (-)
slc35a5 slc35a5 coding upstream 135697 33100934 ~ 33107739 (-)
dcaf6 dcaf6 coding upstream 172570 33137807 ~ 33169651 (-)
LOC103029083 me3,LOC108426042,LOC107748144,LOC107756775,LOC107695468,LOC107595810,LOC101480202,LOC102214044 coding upstream 226546 33191783 ~ 33200687 (-)
LOC103028763 LOC108426041 coding upstream 237072 33202309 ~ 33212497 (-)
LOC103027491 NA coding upstream 273728 33238965 ~ 33245652 (-)
LOC111194944 NA non-coding downstream 28370 32913918 ~ 32932234 (-)
G171479 NA non-coding downstream 149403 32805637 ~ 32811201 (-)
G171461 NA non-coding downstream 257748 32696106 ~ 32702856 (-)
LOC111194865 NA non-coding downstream 276956 32682328 ~ 32683648 (-)
G171463 NA non-coding downstream 281628 32678654 ~ 32678976 (-)
G171525 NA non-coding upstream 57842 33023079 ~ 33099931 (-)
G171546 f5,LOC107565953,LOC107748149,LOC107673674 non-coding upstream 162249 33127486 ~ 33128622 (-)
G171554 NA non-coding upstream 212682 33177919 ~ 33178325 (-)
G171555 NA non-coding upstream 214146 33179383 ~ 33179849 (-)
G171569 NA non-coding upstream 337930 33303167 ~ 33305460 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other downstream 184586 32758507 ~ 32776018 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other downstream 1056436 31895832 ~ 31904168 (-)
G170854 NA other downstream 4272925 28686050 ~ 28687679 (-)
LOC111194963 NA other downstream 5057705 27900191 ~ 27902899 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 6708338 26226457 ~ 26252266 (-)
G171553 NA other upstream 208816 33174053 ~ 33176284 (-)
LOC103028031 LOC108426040 other upstream 249085 33214322 ~ 33235878 (-)
LOC103024438 LOC108426008 other upstream 342756 33307993 ~ 33318351 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other upstream 1290140 34255377 ~ 34273789 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other upstream 1967775 34933012 ~ 34959753 (-)

Expression


Co-expression Network