LOC103027491


Basic Information

Item Value
gene id LOC103027491
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33238965 ~ 33245652 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007227804.3
CATAAGGAAGTGTGCAGACACCAAACCGTCAAGTATTTATTCTGTTACAGGACTGAAATAAAATGACCAGAGAGAGCAGAATGGACAAGTGGAAACTGAGAATCTGTGGGATTGTAGTGCTGTTTTCAGTGATTTCTACTTCTTTTGGGTTGGAAGTTAATATTCCACAATCCACATATAAAGTTGCTCGAGGTGACCAAGTTGCCATCACATGCACTTTTCAGCCCAAAAACCCAGTGAATAATCTCATTATCATCTCATGGACTGCTGACCCTGATGGCTCATTTGATGATGAAGGGCTTAATTTTGGGACGTTCTACTCCAATGACAACCATGTCGACATTGATCCAATGTATGAGGGCAAAATCCAGATTGACAGCAATGTGAACACTCGAGTCTCTACACTGACACTGAAGCAAGCGACCCTGAGAGAAAACAGGCGAATCAAATGCCGAGTTAATATTCCTGGAGATACTGTGGGCCAAACTACAGCCACTACTTCCCTTGTGGTTCTGGTTGCCCCATCTGACCCTGTGTGCAAAATTAAAGGAACCGCTGAGTATTGGCAAAACATCAGCCTGACCTGTGTCTCTGAAGAGGGTTCTCCACTTCCCACCTACAAGTGGCAAAGCTATGATGTCAGAAACACTCCGAGATCATTCCCACCTAAAACCACAgaacAAGATGGAGTTCTTTCTCTGTTCAACATCTCCGCAGACACATCAGGTTACTTCATATGCACAGCAACCAATGAGATCCGCTCTGCCAGCTGCAACCTCACTCTGTCCGTCATGCCTTACACCATGAATATTGGCTCTACAGCAGGCATCATTGGTGGGGTCATTGCTGGAATTGCTGTTCTTGTGCTGATCATTTACTGCTGCTGCAGAAAGAAGGAGAAGCCAGAGGAGTTTGCTATGGGgcCTCCAGTGATCGAGTACCATGACGCAGCAGACAAAGAGGACATAGAAGAAGGCCCTACAGACGCGAGGAAGGCTAGCATTGAAGGGGGTATTGACCCAAAAGAGAAATATGAGCTTAAGGCTGAGAAAACGCCTAACCTGCACAGCTCTGAGGACGGTGATCGCAATTCCAATCGTCGCTTTGACCAAGACGATCGTCAGGACAGAACTTCTCATTCGAGAAGTCGAGAAGATTTGTATCGAGAGAGGGATGATGACCGCAGAGACAACTACAATAGAGGGCGCTATGATGACCGAAGAGATCGTAATGATGACCGAAGAGATCGTAATGATGATCGATATGATGACCGAAGGGATCGTAATGATGATCGATATGATGACCGAAGAGATTATGATGACCGCAGAGATCGGCCTGATGATCGCTATGATGATCGCAGATATCGACATGATGATCGCTATGACGACCGAAGAGATAGGCATGATGATCGCTATGATGACCGCAGAGATCGACGTGATGATCGCTATGATGACCGGCGAGATTACGATGACCGACAAGAGCGACATGATGACCGCAGAGATCGCTACGACGAACGCCAGGATCGTTATGATGACCGCAGAGATCGTTAAGATGATTCTCAGGATTTTGATTGGTAGATAGCATGATCTATACAACAATCTCTGTACTACCTACAGAAACTAATGTGGAGAGTTTTTTAATGGATAATTAGGATGGCCATAGCTAACCttcttttacagtgtacattacattttgttaattaaaaCCTTTCATAAAATCTTTGGAAaagtaatgatttttaaagaaatctAAGATGTTCTGAATGTATGTTTGCAAGGTTATCTCtacaaattatgttttaattcaCAATCTGTAATACTAGCTTTCACTCGCTAGCTTGTTTTGATTTAGCTATACTGGCAGCTTTACACTGGAGAACTTTTACacataaatgtatgtaaaactACAGGTGTTTTTAATTTCATTACTGTTTAAATTGTTGGTTCAACCACTTCTTTTAAGTGTAAATATGACCTAACAGCTTTAATTTGagctaatattactgtataataaacaaTTAACAAAGGAA

Function

GO: NA

KEGG:

id description
K06790 GPA33; cell surface A33 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007227804.3 True 2029 mRNA 0.42 7 33238965 33245652

Neighbor

gene id symbol gene type direction distance location
LOC103028763 LOC108426041 coding downstream 26468 33202309 ~ 33212497 (-)
LOC103029083 me3,LOC108426042,LOC107748144,LOC107756775,LOC107695468,LOC107595810,LOC101480202,LOC102214044 coding downstream 38278 33191783 ~ 33200687 (-)
dcaf6 dcaf6 coding downstream 69314 33137807 ~ 33169651 (-)
slc35a5 slc35a5 coding downstream 131226 33100934 ~ 33107739 (-)
c19hxorf36 cunhxorf36 coding downstream 360298 32872118 ~ 32878667 (-)
LOC103024754 NA coding upstream 37302 33282954 ~ 33296107 (-)
LOC103022452 NA coding upstream 280762 33526414 ~ 33532608 (-)
klf5 klf5,LOC108426007,LOC105912602,LOC105007142,LOC103357491,LOC104962226 coding upstream 290372 33536024 ~ 33543858 (-)
gpr18 gpr18,LOC107748622,LOC107681324,LOC107600424,LOC107570094 coding upstream 574512 33820164 ~ 33823054 (-)
gpr183 LOC103047691,LOC108426030,LOC107740920,LOC107668870,LOC107569509,LOC107600423,LOC107681323,LOC107748620 coding upstream 593050 33838702 ~ 33841615 (-)
G171555 NA non-coding downstream 59116 33179383 ~ 33179849 (-)
G171554 NA non-coding downstream 60640 33177919 ~ 33178325 (-)
G171546 f5,LOC107565953,LOC107748149,LOC107673674 non-coding downstream 110343 33127486 ~ 33128622 (-)
G171525 NA non-coding downstream 139034 33023079 ~ 33099931 (-)
G171523 NA non-coding downstream 273728 32960604 ~ 32965237 (-)
G171569 NA non-coding upstream 57515 33303167 ~ 33305460 (-)
G171573 commd6 non-coding upstream 75033 33320685 ~ 33322970 (-)
G171580 tbc1d4 non-coding upstream 119152 33364804 ~ 33369961 (-)
G171587 tbc1d4 non-coding upstream 133705 33379357 ~ 33381869 (-)
G171595 NA non-coding upstream 189493 33435145 ~ 33435532 (-)
LOC103028031 LOC108426040 other downstream 3087 33214322 ~ 33235878 (-)
G171553 NA other downstream 62681 33174053 ~ 33176284 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other downstream 462947 32758507 ~ 32776018 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other downstream 1334797 31895832 ~ 31904168 (-)
G170854 NA other downstream 4551286 28686050 ~ 28687679 (-)
LOC103024438 LOC108426008 other upstream 62341 33307993 ~ 33318351 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other upstream 1009725 34255377 ~ 34273789 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other upstream 1687360 34933012 ~ 34959753 (-)
G172060 NA other upstream 1976063 35221715 ~ 35222225 (-)
dnajb11 dnajb11,LOC107731764,LOC107690604,LOC107659888,LOC107595843,LOC107719809 other upstream 1988555 35234207 ~ 35299796 (-)

Expression


Co-expression Network