klf5 (klf5,LOC108426007,LOC105912602,LOC105007142,LOC103357491,LOC104962226)


Basic Information

Item Value
gene id klf5
gene name klf5,LOC108426007,LOC105912602,LOC105007142,LOC103357491,LOC104962226
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33536024 ~ 33543858 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007227781.3
acacacactctctcacacacacacacactctctcacacacacacagacagagagacagtctGCTCAGTGCTGGCTCTGTCCTGGGCAGCtgggagctgctgctgctgcgtggttattattattatggtccAGCTGTAGAGGAGAGCAGAGGGACGGACGGAGGGCGAGGAGGAGACGCGCAGTCGCCTTCAGGAGCGCCTGGGTTTAATGCCAGCCTCATCAAACCCCCAGACAGACTGTGGTACGATGGACAAATATCTGCCACCTCAGTTCCAGCCAGGCTCAGAGCCAAAGTTCAGCCAGGACAGCTTCCTGACGATGGAGCAAGGTTCTCCCTACAGCATCAACATGAACGTCTTCCTGCCTGATGTCACGTACCTCCGGACTGGACTCTGCCGGCCCGTGAGGCCCACGGCGCCGCAGATTAAGCCGGAACCACTGCAACCTCTCAGCTACTCAAGCTGCCACCATACTGTATCAGCAGCTCCTCCAGCCCCAGAATACACACACCTCTTCAGTACAGCTAATGCAACAGGCAGCAACAACACTTTCATCAAGCAGGAGACGCCGCCCATTGACTTTCAAGATGTTCCTTTATTTCAGCTTTTGAATTCAGACCTGGATCCCACAGTGTCTGGCACTTCCTCTTTCATGGAGCCTCACAGTAACATGTGCTCATCGTCGATGTCATCCTACAACAACGTGCACTCACCTGCTGCCCAGATTGCAGGACGGCCCATGTGTGACCAGGCCAGCAACGGGCCTTCTTCCTCCGGCCACTTTgggctgcatcagcagcagcagaaagcGGCCTACCTTCCACCCTCCCCTCCAAACTCAGAGCCGGGGAGCCCAGACAGGAGGAAAGAACTCATACACAACCTGTCACCACCGCCCTCCTACGCTGCCAGCATGGCATCTAAACTGGCAGGGCCAGCCTTGGGCCAtggagcagcggcagcagcagcagccctggCAGTACAAACACAAGCAATGGCTGCCAGGTACAACCGCAGGAACAATCCTGATCTAGACAAGAGGAGGATACATCACTGCGACGTCCCAGGGTGTAAGAAAGTCTACACCAAGTCCTCCCATCTGAAGGCCCACTTACGGACTCACACAGGAGAGAAGCCGTACAAATGCTCCTGGGAGGGTTGCGACTGGCGCTTCGCCCGTTCCGACGAGCTGACGCGCCACTTCAGGAAGCACACGGGGGCTAAGCCGTTCCAGTGTGCCGTGTGCAGCCGGAGCTTCTCTCGATCCGATCACCTGGCCCTGCACATGAAGAGACACCAGACTTAGATCTACAGCCACTGCCCAGCCCACTCAAGGCCCCAAGCTGCCCATTAAGGACCTCCCTGTTTACCCTGTGCATGTTTGTAGACACTGGTGTGTTGAGCACGCTTGGGTTTCGGCAGCTCACGAGGTGCATTGCATAGGCTCATAGGTGCTAAACGTGTTGGCGCTAGGCCTGTAGCCCCTGTGGAACGCAACAACAGCTCAGCTCTTTGATGCCAACCTAGCTGTGGATTTTGGTCATcgcctgttttttattttattagtatatatttgtctcatttctcattttcatgaCAAAAGTTTGAACTCTCAGCGTGCCTTTTCCATTTCTATTCAACCTAGAAGCTACTACAGATGCAAAGGTACCCTCCAATCCAAATTGCAACCATTGCACCTTACACTCTCCATTTCACATATGTCCTACTTTTTAAGCTCAATTAAGGTCAAACTGTGGATTAGTTCTCACCATGAATGTAGCAGCAAATCCCAAGGCCTAAGGCCtgttctcttctgttctgaaaaaaaaaacactctgagAAATGTCAAGCCTGAATACTTGAATAAGTAAAACAGGCATTTAGAGCCCTTATCGAAAGAACCAATCAGTTTAAAccagttaaaacacacacagacacacacactgtttcatTCATTGCTCTTATAATGAACCACTGGTTAAATAATGAAgtgttgtgaaaaaaaagtctCAGTTACCAAAGAAAGAATCTAAAAACTATCCATTCAAACGACGTAAAGAaggttttaaagtgtttttgtatttttgttttgtctccAAATCAAAGCACAATTCATAATTCACTAATAACAACATAGCAACCCTCATCTCTTCCAATGCAAACATTTAGATGCTGCATTTCATCTTTTAACACCTGTAAACAACTGACTTTGGGATATTTATGGAGGATCGGGATGAAATACTGTATGTggaacattttatttggaatatcaATAGCTTTAAGTGTACATATTGTAATTGCTTtagtctgtattatttatttttttgagatgggTTCTTTTCTACTCTATAAAATATTTCTCTATGCACATGTATGATGTGTATGGAGCTATGGGAACGGtggttttaattattaaaggaAATCTTATCTTTCAGATCAGCGAAGAAGTACATGGTTGCCTTTGGATAAGAGCCACAGCAGATAATGCTGGGGTTTGTAACTGTACGGCTTacagagtgtgttgtgtgtactgTAAGTGTGGTCTCATAAACTTTAATTTCCACTGCAGTAATCAAGTGTTTTTGGATTTCTTCCTTGAAAACAGTGTAGTAAattatttacaactaaaatgcACCACAGGTAAGGGTATGTCTGCCAAAGACTCTGCCAAATAAATCAGATTCGATTGA
>XM_007227782.3
acactctctcacacacacacacactctctcacacacacacagacagagagacagtctGCTCAGTGCTGGCTCTGTCCTGGGCAGCtgggagctgctgctgctgcgtggttattattattatggtccAGCTGTAGAGGAGAGCAGAGGGACGGACGGAGGGCGAGGAGGAGACGCGCAGTCGCCTTCAGGAGCGCCTGGGTTTAATGCCAGCCTCATCAAACCCCCAGACAGACTGTGATGGACAAATATCTGCCACCTCAGTTCCAGCCAGGCTCAGAGCCAAAGTTCAGCCAGGACAGCTTCCTGACGATGGAGCAAGGTTCTCCCTACAGCATCAACATGAACGTCTTCCTGCCTGATGTCACGTACCTCCGGACTGGACTCTGCCGGCCCGTGAGGCCCACGGCGCCGCAGATTAAGCCGGAACCACTGCAACCTCTCAGCTACTCAAGCTGCCACCATACTGTATCAGCAGCTCCTCCAGCCCCAGAATACACACACCTCTTCAGTACAGCTAATGCAACAGGCAGCAACAACACTTTCATCAAGCAGGAGACGCCGCCCATTGACTTTCAAGATGTTCCTTTATTTCAGCTTTTGAATTCAGACCTGGATCCCACAGTGTCTGGCACTTCCTCTTTCATGGAGCCTCACAGTAACATGTGCTCATCGTCGATGTCATCCTACAACAACGTGCACTCACCTGCTGCCCAGATTGCAGGACGGCCCATGTGTGACCAGGCCAGCAACGGGCCTTCTTCCTCCGGCCACTTTgggctgcatcagcagcagcagaaagcGGCCTACCTTCCACCCTCCCCTCCAAACTCAGAGCCGGGGAGCCCAGACAGGAGGAAAGAACTCATACACAACCTGTCACCACCGCCCTCCTACGCTGCCAGCATGGCATCTAAACTGGCAGGGCCAGCCTTGGGCCAtggagcagcggcagcagcagcagccctggCAGTACAAACACAAGCAATGGCTGCCAGGTACAACCGCAGGAACAATCCTGATCTAGACAAGAGGAGGATACATCACTGCGACGTCCCAGGGTGTAAGAAAGTCTACACCAAGTCCTCCCATCTGAAGGCCCACTTACGGACTCACACAGGAGAGAAGCCGTACAAATGCTCCTGGGAGGGTTGCGACTGGCGCTTCGCCCGTTCCGACGAGCTGACGCGCCACTTCAGGAAGCACACGGGGGCTAAGCCGTTCCAGTGTGCCGTGTGCAGCCGGAGCTTCTCTCGATCCGATCACCTGGCCCTGCACATGAAGAGACACCAGACTTAGATCTACAGCCACTGCCCAGCCCACTCAAGGCCCCAAGCTGCCCATTAAGGACCTCCCTGTTTACCCTGTGCATGTTTGTAGACACTGGTGTGTTGAGCACGCTTGGGTTTCGGCAGCTCACGAGGTGCATTGCATAGGCTCATAGGTGCTAAACGTGTTGGCGCTAGGCCTGTAGCCCCTGTGGAACGCAACAACAGCTCAGCTCTTTGATGCCAACCTAGCTGTGGATTTTGGTCATcgcctgttttttattttattagtatatatttgtctcatttctcattttcatgaCAAAAGTTTGAACTCTCAGCGTGCCTTTTCCATTTCTATTCAACCTAGAAGCTACTACAGATGCAAAGGTACCCTCCAATCCAAATTGCAACCATTGCACCTTACACTCTCCATTTCACATATGTCCTACTTTTTAAGCTCAATTAAGGTCAAACTGTGGATTAGTTCTCACCATGAATGTAGCAGCAAATCCCAAGGCCTAAGGCCtgttctcttctgttctgaaaaaaaaaacactctgagAAATGTCAAGCCTGAATACTTGAATAAGTAAAACAGGCATTTAGAGCCCTTATCGAAAGAACCAATCAGTTTAAAccagttaaaacacacacagacacacacactgtttcatTCATTGCTCTTATAATGAACCACTGGTTAAATAATGAAgtgttgtgaaaaaaaagtctCAGTTACCAAAGAAAGAATCTAAAAACTATCCATTCAAACGACGTAAAGAaggttttaaagtgtttttgtatttttgttttgtctccAAATCAAAGCACAATTCATAATTCACTAATAACAACATAGCAACCCTCATCTCTTCCAATGCAAACATTTAGATGCTGCATTTCATCTTTTAACACCTGTAAACAACTGACTTTGGGATATTTATGGAGGATCGGGATGAAATACTGTATGTggaacattttatttggaatatcaATAGCTTTAAGTGTACATATTGTAATTGCTTtagtctgtattatttatttttttgagatgggTTCTTTTCTACTCTATAAAATATTTCTCTATGCACATGTATGATGTGTATGGAGCTATGGGAACGGtggttttaattattaaaggaAATCTTATCTTTCAGATCAGCGAAGAAGTACATGGTTGCCTTTGGATAAGAGCCACAGCAGATAATGCTGGGGTTTGTAACTGTACGGCTTacagagtgtgttgtgtgtactgTAAGTGTGGTCTCATAAACTTTAATTTCCACTGCAGTAATCAAGTGTTTTTGGATTTCTTCCTTGAAAACAGTGTAGTAAattatttacaactaaaatgcACCACAGGTAAGGGTATGTCTGCCAAAGACTCTGCCAAATAAATCAGATTCGATTGA

Function

symbol description
klf5 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in cell-cell signaling via exosome and positive regulation of pri-miRNA transcription by RNA polymerase II. Located in Golgi apparatus and nucleoplasm.

NR:

description
Krueppel-like factor 5 isoform X1

GO: NA

KEGG:

id description
K09207 KLF6_7; krueppel-like factor 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007227781.3 True 2689 mRNA 0.47 4 33536024 33543858
XM_007227782.3 False 2680 mRNA 0.47 4 33536024 33543854

Neighbor

gene id symbol gene type direction distance location
LOC103022452 NA coding downstream 3416 33526414 ~ 33532608 (-)
LOC103024754 NA coding downstream 239917 33282954 ~ 33296107 (-)
LOC103027491 NA coding downstream 290372 33238965 ~ 33245652 (-)
LOC103028763 LOC108426041 coding downstream 323527 33202309 ~ 33212497 (-)
LOC103029083 me3,LOC108426042,LOC107748144,LOC107756775,LOC107695468,LOC107595810,LOC101480202,LOC102214044 coding downstream 335337 33191783 ~ 33200687 (-)
gpr18 gpr18,LOC107748622,LOC107681324,LOC107600424,LOC107570094 coding upstream 276306 33820164 ~ 33823054 (-)
gpr183 LOC103047691,LOC108426030,LOC107740920,LOC107668870,LOC107569509,LOC107600423,LOC107681323,LOC107748620 coding upstream 294844 33838702 ~ 33841615 (-)
LOC103047371 LOC103047371 coding upstream 327130 33870988 ~ 33875305 (-)
zic5 zic5 coding upstream 478111 34021969 ~ 34026838 (-)
nalcn nalcn coding upstream 779315 34323173 ~ 34445239 (-)
G171627 NA non-coding downstream 12130 33522201 ~ 33523894 (-)
G171595 NA non-coding downstream 100492 33435145 ~ 33435532 (-)
G171587 tbc1d4 non-coding downstream 154155 33379357 ~ 33381869 (-)
G171580 tbc1d4 non-coding downstream 166063 33364804 ~ 33369961 (-)
G171573 commd6 non-coding downstream 213054 33320685 ~ 33322970 (-)
LOC103021721 NA non-coding upstream 55016 33598874 ~ 33618542 (-)
G171653 NA non-coding upstream 246625 33790483 ~ 33791587 (-)
G171656 NA non-coding upstream 275311 33819169 ~ 33819443 (-)
G171659 NA non-coding upstream 289968 33833826 ~ 33834086 (-)
LOC111194945 NA non-coding upstream 357688 33901546 ~ 33906036 (-)
LOC103024438 LOC108426008 other downstream 217673 33307993 ~ 33318351 (-)
LOC103028031 LOC108426040 other downstream 300146 33214322 ~ 33235878 (-)
G171553 NA other downstream 359740 33174053 ~ 33176284 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other downstream 760006 32758507 ~ 32776018 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other downstream 1631856 31895832 ~ 31904168 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other upstream 711519 34255377 ~ 34273789 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other upstream 1389154 34933012 ~ 34959753 (-)
G172060 NA other upstream 1677857 35221715 ~ 35222225 (-)
dnajb11 dnajb11,LOC107731764,LOC107690604,LOC107659888,LOC107595843,LOC107719809 other upstream 1690349 35234207 ~ 35299796 (-)
olig2 olig2,olig3,LOC107731746,LOC107719825,LOC107659900,LOC107690629,LOC107569749 other upstream 1825525 35369383 ~ 35371404 (-)

Expression


Co-expression Network