G171656


Basic Information

Item Value
gene id G171656
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33819169 ~ 33819443 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU232350
aaaaaaaaaaaactaaactaaaacattttgaaattaaatgtaaaggaaacaaaTGGTTCTTTCTATTTACAAATACAAGCTTAAGTTTTATGTGTGAACGAAAATTCATAATCAAAATCGTTGAAGAATATCAATATTTGTATAGTAATCCCCATTCCTATCTGTTTAGAAGtgttaatataatgtaaaatgatcAGAACTCCATTCCCAGCTCTAATATCTGAAGTAAATGGAACACAGCACATATTGTTATAGACATAGACAAGAAGCCTGAg

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU232350 True 275 lncRNA 0.28 1 33819169 33819443

Neighbor

gene id symbol gene type direction distance location
klf5 klf5,LOC108426007,LOC105912602,LOC105007142,LOC103357491,LOC104962226 coding downstream 275311 33536024 ~ 33543858 (-)
LOC103022452 NA coding downstream 286561 33526414 ~ 33532608 (-)
LOC103024754 NA coding downstream 523062 33282954 ~ 33296107 (-)
LOC103027491 NA coding downstream 573517 33238965 ~ 33245652 (-)
LOC103028763 LOC108426041 coding downstream 606672 33202309 ~ 33212497 (-)
gpr18 gpr18,LOC107748622,LOC107681324,LOC107600424,LOC107570094 coding upstream 721 33820164 ~ 33823054 (-)
gpr183 LOC103047691,LOC108426030,LOC107740920,LOC107668870,LOC107569509,LOC107600423,LOC107681323,LOC107748620 coding upstream 19259 33838702 ~ 33841615 (-)
LOC103047371 LOC103047371 coding upstream 51545 33870988 ~ 33875305 (-)
zic5 zic5 coding upstream 202526 34021969 ~ 34026838 (-)
nalcn nalcn coding upstream 503730 34323173 ~ 34445239 (-)
G171653 NA non-coding downstream 27582 33790483 ~ 33791587 (-)
LOC103021721 NA non-coding downstream 200627 33598874 ~ 33618542 (-)
G171627 NA non-coding downstream 295275 33522201 ~ 33523894 (-)
G171595 NA non-coding downstream 383637 33435145 ~ 33435532 (-)
G171587 tbc1d4 non-coding downstream 437300 33379357 ~ 33381869 (-)
G171659 NA non-coding upstream 14383 33833826 ~ 33834086 (-)
LOC111194945 NA non-coding upstream 82103 33901546 ~ 33906036 (-)
G171716 NA non-coding upstream 183224 34002667 ~ 34004872 (-)
G171732 NA non-coding upstream 243709 34063152 ~ 34063495 (-)
G171768 NA non-coding upstream 347944 34167387 ~ 34167646 (-)
LOC103024438 LOC108426008 other downstream 500818 33307993 ~ 33318351 (-)
LOC103028031 LOC108426040 other downstream 583291 33214322 ~ 33235878 (-)
G171553 NA other downstream 642885 33174053 ~ 33176284 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other downstream 1043151 32758507 ~ 32776018 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other downstream 1915001 31895832 ~ 31904168 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other upstream 435934 34255377 ~ 34273789 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other upstream 1113569 34933012 ~ 34959753 (-)
G172060 NA other upstream 1402272 35221715 ~ 35222225 (-)
dnajb11 dnajb11,LOC107731764,LOC107690604,LOC107659888,LOC107595843,LOC107719809 other upstream 1414764 35234207 ~ 35299796 (-)
olig2 olig2,olig3,LOC107731746,LOC107719825,LOC107659900,LOC107690629,LOC107569749 other upstream 1549940 35369383 ~ 35371404 (-)

Expression


Co-expression Network