LOC111194945


Basic Information

Item Value
gene id LOC111194945
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33901546 ~ 33906036 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651398.1
tccgttccaccttaaacggtgCCTCAGGTACGCTCGCTTGCCTgaactatttaaggtggaacggaaagtTCGACCAAAAGTGCCTGGTCTCAGCGGTCAGACGTGGGGTTGGCTgaggacagagagagtgtgGAGAGCTACACACATTTATTTCCTCGGCTTATGCTCAGCGCCATGTTTCCACCCTCAACGCAACGCGCCCTCCCATTGGCTGGCAGCGTCACCACGTTGCACGTTTGAAGACTTTTGATTGGCTGAGGGACGGAGGGCGCTCGTCGCTGCTGATTTAAAGCTGTAAACCAAACGGAACCACTGAGTCCCTCGAAAGACGCCAGAATTTGGTGGAGCCAAACAGGGGTACGTGCCGCTTGATGCAAGTCACTCAATACTGCATGCGGCTGCTGTGGACGCATGTAATTTCGTCCAGCGTTGTGAAACCAGCTCACCAATGACATCTATGCCAAAATCTATGCCAGTCTAAAACATGCCATGCATTagcaattctttaaaaaaacaaaaaacaaaaaacaataaaagctaATGTTTTTGACAGTAGAATACATATCTCATCCCTCTCCCCCCTCTTTTGTCCTCCCTGATACAAATGGACAATGCATCACCAGGGTTTGATGTCTCTGATGTCTGGGTTCATTAAAAATCTTGAAATAGTGCCAGGACTGGGGCCCGGAGATTAAAGGAATATAAAAGGATGACAAAATTTATGGATGGCAAGTCACCACCTCACTCTGGCATTTCTAATAAACAAATGGTTTCTGTTTCCAATTTAAATTTCTCATTATACTGTGActttttgaaaatgtgttttgatttaCCAATATTTTATCTGTAAAACTGCATAATTGATTAGATTTACATGGCTCTGATATTCAACTCCAGTGTCTctccaaagagagagagggagagagcgagagagggagaggagggaACTCCAGAGGTATAATCGCATGACATGAAACAAGGGCATGtcaggaaaaaatataattgcGGTTCCTTGAAACCTCTGgcacattttctttctttgaaaaactgttttttgaaAAAGGCTGACTATGAAGTGATGATACACTTCACAGCCTTCTCACAGCCACATCCGTGC

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651398.1 True 1117 lncRNA 0.44 3 33901546 33906036

Neighbor

gene id symbol gene type direction distance location
LOC103047371 LOC103047371 coding downstream 26241 33870988 ~ 33875305 (-)
gpr183 LOC103047691,LOC108426030,LOC107740920,LOC107668870,LOC107569509,LOC107600423,LOC107681323,LOC107748620 coding downstream 59931 33838702 ~ 33841615 (-)
gpr18 gpr18,LOC107748622,LOC107681324,LOC107600424,LOC107570094 coding downstream 78492 33820164 ~ 33823054 (-)
klf5 klf5,LOC108426007,LOC105912602,LOC105007142,LOC103357491,LOC104962226 coding downstream 357688 33536024 ~ 33543858 (-)
LOC103022452 NA coding downstream 368938 33526414 ~ 33532608 (-)
zic5 zic5 coding upstream 115933 34021969 ~ 34026838 (-)
nalcn nalcn coding upstream 417137 34323173 ~ 34445239 (-)
fgf14 fgf14 coding upstream 644390 34550426 ~ 34759577 (-)
LOC111194948 NA coding upstream 907391 34813427 ~ 34815919 (-)
LOC111194949 NA coding upstream 913060 34819096 ~ 34821789 (-)
G171659 NA non-coding downstream 67460 33833826 ~ 33834086 (-)
G171656 NA non-coding downstream 82103 33819169 ~ 33819443 (-)
G171653 NA non-coding downstream 109959 33790483 ~ 33791587 (-)
LOC103021721 NA non-coding downstream 283004 33598874 ~ 33618542 (-)
G171627 NA non-coding downstream 377652 33522201 ~ 33523894 (-)
G171716 NA non-coding upstream 96631 34002667 ~ 34004872 (-)
G171732 NA non-coding upstream 157116 34063152 ~ 34063495 (-)
G171768 NA non-coding upstream 261351 34167387 ~ 34167646 (-)
G171979 NA non-coding upstream 565752 34471788 ~ 34560383 (-)
G171982 NA non-coding upstream 580259 34486295 ~ 34579819 (-)
LOC103024438 LOC108426008 other downstream 583195 33307993 ~ 33318351 (-)
LOC103028031 LOC108426040 other downstream 665668 33214322 ~ 33235878 (-)
G171553 NA other downstream 725262 33174053 ~ 33176284 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other downstream 1125528 32758507 ~ 32776018 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other downstream 1997378 31895832 ~ 31904168 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other upstream 349341 34255377 ~ 34273789 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other upstream 1026976 34933012 ~ 34959753 (-)
G172060 NA other upstream 1315679 35221715 ~ 35222225 (-)
dnajb11 dnajb11,LOC107731764,LOC107690604,LOC107659888,LOC107595843,LOC107719809 other upstream 1328171 35234207 ~ 35299796 (-)
olig2 olig2,olig3,LOC107731746,LOC107719825,LOC107659900,LOC107690629,LOC107569749 other upstream 1463347 35369383 ~ 35371404 (-)

Expression


Co-expression Network