nalcn (nalcn)


Basic Information

Item Value
gene id nalcn
gene name nalcn
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 34323173 ~ 34445239 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680007.1
AGAAAAGTCACAGCTCTGCTGCCCATTTATCTTTCGTACTGGTTTCCACCCCTCTGTATTCTGGGGATGAATGCACCAATGAGGAGCCTGACCGGTATGCCTGATCGCATGTTATGTGCAGTGCTGGAGCAATTTCAGCTTTACTTTTCCCGTTGATTCACTCCCTTTATAGCACGGCTAGTCCCAGCATGCTGAAGAGGAAGCAGAGCTCGCGCGTCGAGGCGCAGCCCATGACGGATTTTGGGCCTGATGAAACGCTCACCGACAGTGCTGACATCCTCTGGATCAACAAACCATGGGTGCACTCCTTGTTGCGGGCCTGTGCTATAATCAGCGTCATCTCGGTGTGCATGAACACGCCCAAGACATTCGAGCACTACCCACCCCTGGAGTACGTCACCTTCGCCCTGGACACTCTGCTCATGTTCCTCTACACAGCCGAGATGATCGCCAAGATGCACATCAGAGGCATCATCAAGGGAGATAACTCTTATGTTAAGGACCGCTGGTGCATGTTTGATGGCTTCATGGTGGTCTTCCTCTGGGTCTCTCTCGTGCTTCAGGTGTTTGAAATAGCGGAGCTCGTGGATCAGATGTCACCGTGGGGAATGCTGCGTATACCCAGGGCCCTCATAATGATCCGAGCCTTTCGGATCTATTTTAGATTTGAGCTGCCTCGCTCTCGCATAACCAACATCCTGAAGCGATCCGGAGAGCAAATCTGGAGTGTGTCcatatttttactctttttcctTCTACTTTATGGAATCCTTGGCGTTCAGATGTTTGGCACCTTCAATTTCCATTGTGTCACCAATGAGACGGAGAGAGAtaatgtGACATGGAACAGCCTCGCCATTCCTGACACACACTGCTCGCCAGATGGGGAGGGCTACCAGTGCCCCATGGGATTCAAGTGTGTGGACCTGGAGGACCTGGGTCTCAGCAGACAGGAGCTGGGATACAGTGGTTTTAACGAGCTTGGTACCAGCATATTCACTGTGTATGAGGCTGCCTCTCAGGAGGGCTGGGTCTTCATCATGTACCGAGCCATCGACAGCTTCCCACGCTGGCGCTCCTACTTCTACTTCATCACACTCATCTTCTTCCTCGCTTGGCTGGTCAAGAATGTTTTCATCGCTGTGATCATTGAGACGTTTGCTGAGATCAGAGTGCAGTTCCAGCAGATGTGGGGTTCCCGAAGCAGCACTACATCTACAGCCACTACACAGATGTTTCATGAGGATGCGTCTGGAGGATGGCAGCTTGTAGCGGTGGATGTGAATAAGCCACATGGCCGTGCGCCCGCCTGCCTCCAGAAACTGATGCGCTCCTCCGTGTTCCACATGTTCATTCTGAGTATGGTGGCTGTGGATGTGATTGTGGCTTCCAGCAACTACTACAAAGGAAAGAACCACAAGAAGGACTACGATGAGTTCTACCTGGCCGAGGTTGCCTTCACGGTGCTCTTTGATCTGGAGGCTCTTCTGAAGATCTGGTGCCTGGGCTTTACTGGCTACATCAGTTCATCTCTACATAAGTTTGAGTCTCTCCTGGTTGTGGGCACCACCCTGCACATCTACCCGGACCTCTACCACTCTCAGTTAACCTACTTTCAGGTGCTGAGAGTGGTGCGTCTAATAAAGATCTCGCCTGCGCTGGAGGATTTTGTGTATAAGATATTTGGTCCAGGGAAGAAGCTGGGCAGTCTCGTCGTGTTCACAGCCAGTCTGCTTATAGTCATGTCTGCCATCAGTCTTCAGATGTTCTGCTTTGTGGAGGAATTGGACCGTTTCACCACCTTTCCCAGGGCCTTCATGTCCATGTTTCAGATTCTGACTCAGGAAGGCTGGGTGGATGTTATGGACCAAACCCTGGTAGCAGTTGGACACATGTGGGCTCCAGTGGTGGCTATCTACTTCATCCTCTACCACCTGTTTGCTACTCTGATCTTGCTGAGTCTTTTTGTGGCTGTTATTCTGGACAATCTTGAGCTTGATGAAGACCTGAAAAAACTGAAACAGCTGAAGCAGAGTGAAGCCAATGCAGATACAAAAGAGAAGCTTCCCCTGCGTTTACGCATCTTTGAGAAGTTCCCCAACAGACCACAGATGGTGAAGATATCCAAGCTGCCGTCCGACTTCACTGTGCCCAGGATTAGggaAAGCTTTATGAAGCAGTTTATTGACCGGCAGCAGCAGGACCCCAGCTGTCTATTTCGTAGACTCCCCTCCGCCTCGTCTTCCTCCTGCGATCACTCCAAACGCTCTGCTATTGAGgataataaatacattgatCAGAAGCTAAGAAGATCAATATTCAGCATCCGTGCTCGCAACCTGCTAGAAAAGGAAACAACAGTCAATAAAATTCTACGGGCTTGCACCAGACAGCGCATGCTGAGCGGCTCCTTTGAGGGCCAGCCAACCAAAGAGCGCTCCATCCTCAGTGTGCAGCACCACATCCGCCAGGAGCGCAGGTCCCTCAGACACGGCTCCACCAGCCAGAGAATCAGCAGAGGCAAATCTCTGGAGACTCTCACCCAAGATCACACTAACACTGTGCGCTATCGGAACGCTCAGAGAGAGGACAGCGAGATCAAGATGATCCAGGAGAAGAAGGAACAGGCTGAGATGAAACGgaAAGTTCAAGAAGAGGAGCTGAGAGAGAACCATCCTTACTTTGACAAGCCTCTGTTTATCGTCGGGAGAGAGCACCGCTTCCGAAACTTCTGCCGGATGATCGTGCGAGCCCGATTTAATGCGTTGAAAACAGATCCCATAACAGGAGCAGTAAAGAGCACAAAGTATCATCAGTTATAtgatCTGCTGGGATTGGTGACGTATCTGGACTGGGTGATGATCGTGGTCACTATCTGCTCTTGCATCTCCATGATGTTTGAGTCTCCTTTCACCAGAGTTATGCATGCCCCCACACTGCAGATTGCCGAGTACGTGTTTGTGATATTCATGAGCATTGAGCTGAATCTGAAGATCATGGCGGACGGCCTCTTCTTCACACCTACTGCAGTGATCCGAGACTTCGGCGGCGTCATGGACATTTTCATCTACTTAgtCAGTCTGATTTTCCTGTGTTGGCTTCCCACGGATGTTCCCCCAGAATCAGGTGCTCAGCTACTGATGATGCTGCGCTGTCTGCGTCCTCTGCGCATCTTTAAGCTGGTGCCTCAGATGAGGAAGGTGGTGCGGGAGGTCCTTAAGGGCTTTAAAGAAATCTTCCTGGTCTCTATTCTTCTTCTGACATTAATGCTGGTGTTTGCAAGCTTCGGGGTGCAGCTCTTTGCTGGGAAACTTGCCAAGTGTAACGATCCTACCATTATTCATGAGGAGGACTGCCATGGAATCTTCAGAATCAACGTCAGCATCTccaaaaacctcaacctaaaGCTCAAACCCGACGAGAAAAAACCTGGATTTTGGGTGCCAAGAGTGTGGGCAAACCCTCGCAACTTCAACTTTGACAACGTTGGCAACGCCATGCTGGCTCTGTTTGAGGTGCTGTCTCTGAAAGGCTGGGTGGAAGTGAGAGATGTCATCATACACAGAGTGGATCCAACCCACGGCATCTACATCCACGTCTTCGTATTCCTGGGCTGCATGATTGGGCTCACTCTGTTTGTAGGCGTGGTCATAGCTAACTTCAATGAAAACAAGGGCACAGCTCTGCTGACGGTGGACCAGAGGAGATGGGAGGATCTGAAGAGCAGGCTGAAGATCGCTCAGCCACTGCATCTCCCCCCGAGACCAgaaAACGGTGGCTTCCGTGCCAAGATGTATGACATCACCCAGCACCCTTTCTTCAAGCGAGGCATAGCAGTGCTGGTTCTAGCCCAGTCCGTTTTGCTGTCTGTTAAGTGGGATGTTGGTGCCCCATTAACATTTCCTCTGGCAACAATGTCTGTGGTGTTTACCTTCATCTTTGTATTGGAGGTGACGATGAAGCTGATAGCCATGTCACCAGCTGGATACTGGCAGAGCAGGAGGAACAGATATGACCTCCTGGTTACATCTCTCGGGGTCATATGGATCATTTTACACTTCGCTTTACtgAATGCCTATACCTACATGATGGGAACCTGCGTGATAGTGTTGAGGTTTTTCACAATATGTGGAAAGCATgtgacACTGAAAATTctcatcataaatttacctcaGAGTTCTGTTCTAGTTATACATTTTCTTCAGCAGTGCTCTAGTCATATGTGCTCCCtcttccactctctctctctctctctctctgtctctcgttttctcgctctctctctctctctctctcctctctctctctctctctctctcttctctctctctctcctctctctctctctctctcacaggcATGCAAACTTCTCCACCGCAGGGAAGGCCATCACTGTGCTGTTCCGTATCGTCACGGGTGAAGACTGGAATAAGATTATGCATGACTGCATGGTGCAGCCTCCATCTTGCACGCCAGACAAGCACCGCTACTGGGAGACGGACTGCGGCAACTACGCCGGCGCCCTCATCTACTTCTGCTCCTTCTACGTCATCATCGCCTACATCATGCTCAACCTGCTCGTGGCCATCATTGTGGAGAACTTCTCTTTGTTCTACTCTACGGAGGAGGATCAGTTGCTAAGCTACAACGACCTGCGTCACTTCCAGATCATTTGGAACATGGTGGATGACAAGCGAGAGGGTGTGATCCCCACCTCGCGGGTGAAGTTCTTGCTGCGGCTGCTGAGAGGCCGGCTGGAGGTGGACCTGGACAAAGACAAGCTGCTCTTCAAACACATGTGCTACGAGATGGAGCGGCTGCACAGCGGCGGCGATGTCACTTTCCATGATGTGCTGAGcatGCTATCATACCGCTCAGTGGACATCAGGAAGAGTCTGCAGCTGGAGGAGTTGCTGGCTCGGGAGCAGCTGGAATACACCATCGAGGAGGAGGTAGCCAAGCAGACCATCCGCATGTGGCTGAAGAAGTGCCTGAAACGCATTCGAGCTaagcagcagcagtcgTGCAGTATCATCCTGAGTCTGCGCGAGAGCCAGCAGCAGGAAATGCGTCGCCTCCTTAATCCCCCCAGCATCGAGACCACCGTCCCAAGCGACGACTCCAACACTAACAACCAGGACAACCCCACGCAGCCCGAGAACAGCGGCCTGCAGACCCTGCTGAGCCCCACGCTGTCAGACCGCAGCGGATACAGGCAGGACTCTGCTGACCGGCCGCAGAGGAAGCTGGGCCAGTGGAGGCTGCCCacagGTCGCACTAGTGTGAAGTCCATGGTGTGCAAGATGAACCCGGTGAGTGACGAAGCCTCCTCAGGATCAGAAGTGAAGAAGTGGTGGACTCGGCAGCTGACGGTGGAGAGCGACGAGAGTGGCGACGACCTCATTGATCTCTGAGGTTGTGTAGCATCACGCGTACATGTGCACAAACACTGaatacactgtacacacacacagctgagagCCACagagccgctgctgctgctgctgctgctgctgctgctgtacagCTCTGGTCTGGGGCAGGGGTAGGATGTATTATCTATCCTACGGTATTATGCTCTACCTTGTTAAGGAATGTGATAAACACTTCAGATGTTCAGATGTGTTTACCGTGCATAATAATATGCATAAGTGAAGTATGCAAATTGTAGAGGAAATTATGATATTGCATTTGGGAGTGCTGCTGCCAAAACCTATAGAAAGTGATCTCCATTGAAATGTCATTAGCATCACATACTGCTTCCAAAGCCCTTTTCAAAGCAATCCGCCATCTGTGTTTTAAAAGCACTCCATAAAGGATCTCATTCACCTTTATGAATTATGGAAATCATTTCCATCTATGATTAATTAATGTCTGAATTAAGTGGATCAGTTTATACTGGACACCGTTAAGAACTGGACGGACCGTCGTGAGCTCGAGCATCATTCTTCATCTTAGGGTTTTGCTTCTGAGAGAAGATCTTTACAAACTTCTTTATCAATAATGTAAAGAGCAGCTGCTGTACGCCCCTCAGGATGTTAAGAATGTAACAGAACAGACTCAGACTGAGCTCAGAGACAGATGCGGAGGCTATGAGAGCATGGCTATACAGAGCTTTAGTGCCGCCAGATGTTCTGCCGTGTCAAAACCGAGTCAACATGAAAGCCATAAGGACTTCTTCTGTTCTACTGTTCTTCTGTTTGCTTTGTCTTTGTGCCAGCGTCTTACCTCCCTACATAatccctaataataataataatagatttataaatacatttttaaatcatattcacTGTTACCTTGGAGGGGGTTGTGATTGGTTGGATGGACCTACAGTGTTTAAACTGAACATCTGTGTGGAAGAGACATTCAGTGTACCTCTGCTCTGTTTCTCTATGTGTGTTAACGTGACTGTGTTAAATCTTCACCTTTATCTTCATCTTAAGAGTAttcaaataaacagaatttatttaatttataaagtaGACATATTAAAATGAAGCTATTTTGTAAAAGGAATTGCAGTTTATATGTATCCTGTGATTTTAAAGGaatattaaaagataaataatatta

Function

symbol description
nalcn Predicted to enable cation channel activity. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system. Orthologous to human NALCN (sodium leak channel, non-selective).

NR:

description
sodium leak channel non-selective protein

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG:

id description
K21863 NALCN; sodium leak channel non-selective protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680007.1 True 6576 mRNA 0.49 45 34323173 34445239

Neighbor

gene id symbol gene type direction distance location
zic5 zic5 coding downstream 296335 34021969 ~ 34026838 (-)
LOC103047371 LOC103047371 coding downstream 447868 33870988 ~ 33875305 (-)
gpr183 LOC103047691,LOC108426030,LOC107740920,LOC107668870,LOC107569509,LOC107600423,LOC107681323,LOC107748620 coding downstream 481558 33838702 ~ 33841615 (-)
gpr18 gpr18,LOC107748622,LOC107681324,LOC107600424,LOC107570094 coding downstream 500119 33820164 ~ 33823054 (-)
klf5 klf5,LOC108426007,LOC105912602,LOC105007142,LOC103357491,LOC104962226 coding downstream 779315 33536024 ~ 33543858 (-)
fgf14 fgf14 coding upstream 105187 34550426 ~ 34759577 (-)
LOC111194948 NA coding upstream 368188 34813427 ~ 34815919 (-)
LOC111194949 NA coding upstream 373857 34819096 ~ 34821789 (-)
ankrd44 ankrd44,LOC107719801,LOC107595853,LOC107659898 coding upstream 395136 34840375 ~ 34878649 (-)
sf3b1 sf3b1,LOC107731751,LOC100380860,LOC107690614 coding upstream 435266 34880505 ~ 34896212 (-)
G171768 NA non-coding downstream 155527 34167387 ~ 34167646 (-)
G171732 NA non-coding downstream 259678 34063152 ~ 34063495 (-)
G171716 NA non-coding downstream 318301 34002667 ~ 34004872 (-)
LOC111194945 NA non-coding downstream 417137 33901546 ~ 33906036 (-)
G171659 NA non-coding downstream 489087 33833826 ~ 33834086 (-)
G171979 NA non-coding upstream 26549 34471788 ~ 34560383 (-)
G171982 NA non-coding upstream 41056 34486295 ~ 34579819 (-)
G171992 NA non-coding upstream 168469 34613708 ~ 34614549 (-)
G171994 NA non-coding upstream 197478 34642717 ~ 34666830 (-)
G172007 NA non-coding upstream 340400 34785639 ~ 34785893 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other downstream 49384 34255377 ~ 34273789 (-)
LOC103024438 LOC108426008 other downstream 1004822 33307993 ~ 33318351 (-)
LOC103028031 LOC108426040 other downstream 1087295 33214322 ~ 33235878 (-)
G171553 NA other downstream 1146889 33174053 ~ 33176284 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other downstream 1547155 32758507 ~ 32776018 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other upstream 487773 34933012 ~ 34959753 (-)
G172060 NA other upstream 776476 35221715 ~ 35222225 (-)
dnajb11 dnajb11,LOC107731764,LOC107690604,LOC107659888,LOC107595843,LOC107719809 other upstream 788968 35234207 ~ 35299796 (-)
olig2 olig2,olig3,LOC107731746,LOC107719825,LOC107659900,LOC107690629,LOC107569749 other upstream 924144 35369383 ~ 35371404 (-)

Expression


Co-expression Network