G171994


Basic Information

Item Value
gene id G171994
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 34642717 ~ 34666830 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU232792
AGAGATTAGCATGTACTAACCACCAAGTTAGTAGCTTGCTAACAGCTAGCTGCTAATACTACAAGCCAAGCTACAACATAATAATTACAAGCAAGTAACACAGAGCAACAAATCACCACAGTTTTGCAAACGTTACTTTGTGAAAGTCAGTTTAAACTGGAGGTACTGTGCAaacgttttaggcaccaaagcaaatgacactaatccatttatataaaatagtaaaaatataatacaaaaataaaagaagtactaattttaaatcaacatttaataaaaatatatatgtaaaacacaacattctaaaataccataaaaaaaacaaatttgacacattaaaagtaaaaaattgtatgaaatataaaataagtaaaaagataatagtaaaagtaaagtaaaatgttacaaatgataagaagtgattaaatgaataacagaactaagaacaagaatgaaaatataaaacattaaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagataaactaatgaaaaaaaagtcatttaaaaattagaggggcaaaaaaaaaaaaaaaaattggggggTAGGCAATGCTCCCTTCAATGCCACTTCCCCCAGAACAGGACTGATTAAGCTTAATGAAGggagacaaagaagaagaagaagcttcCCTTTAACCAAATTACAAAGAACACAAAGAGTCTGATCTGAATCAGCACACTCAACAAAACAGACAGCAGCCATCAGAAAGGCCGGGGGTGAGCCGGGGGGGACGAGCCCACTGCAGTGAGCAGCTGCAGCACAAACGCTGGCGGTGTAATATACGAACGGCCATATTCATAAAACATGAATCTGCTCTCCATTCAATCATTTGGCCGCGCTGAGCGCCGGCTTATTGGACAGACCACTGAAGGGTCCCTCTCGCCAGCCTAAATCAGAGCTGACACTGAAAATACTGtaccagaacacacacaaacacaagtgCTGCCGGCCTGAGGAGACTGACACAGAGTGACTGCTGATccaactctgtgtgtgtgtgtgtgtgtgtgtgtgg

Function

NR:

description
Zgc:158463 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232792 True 1091 lncRNA 0.34 2 34642717 34666830

Neighbor

gene id symbol gene type direction distance location
nalcn nalcn coding downstream 197478 34323173 ~ 34445239 (-)
zic5 zic5 coding downstream 615879 34021969 ~ 34026838 (-)
LOC103047371 LOC103047371 coding downstream 767412 33870988 ~ 33875305 (-)
gpr183 LOC103047691,LOC108426030,LOC107740920,LOC107668870,LOC107569509,LOC107600423,LOC107681323,LOC107748620 coding downstream 801102 33838702 ~ 33841615 (-)
gpr18 gpr18,LOC107748622,LOC107681324,LOC107600424,LOC107570094 coding downstream 819663 33820164 ~ 33823054 (-)
LOC111194948 NA coding upstream 146597 34813427 ~ 34815919 (-)
LOC111194949 NA coding upstream 152266 34819096 ~ 34821789 (-)
ankrd44 ankrd44,LOC107719801,LOC107595853,LOC107659898 coding upstream 173545 34840375 ~ 34878649 (-)
sf3b1 sf3b1,LOC107731751,LOC100380860,LOC107690614 coding upstream 213675 34880505 ~ 34896212 (-)
hspd1 hspd1,LOC107690611,LOC107569661 coding upstream 243331 34910161 ~ 34920697 (-)
G171992 NA non-coding downstream 28168 34613708 ~ 34614549 (-)
G171982 NA non-coding downstream 62898 34486295 ~ 34579819 (-)
G171979 NA non-coding downstream 82334 34471788 ~ 34560383 (-)
G171768 NA non-coding downstream 475071 34167387 ~ 34167646 (-)
G171732 NA non-coding downstream 579222 34063152 ~ 34063495 (-)
G172007 NA non-coding upstream 118809 34785639 ~ 34785893 (-)
G172019 NA non-coding upstream 146436 34813266 ~ 34819641 (-)
G172027 NA non-coding upstream 166893 34833723 ~ 34834376 (-)
G171995 NA non-coding upstream 168227 34835057 ~ 34835412 (-)
G172032 coq10b,LOC107569649,LOC107690612,LOC107731759,LOC107659895,LOC107719803 non-coding upstream 231379 34898209 ~ 34908956 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other downstream 368928 34255377 ~ 34273789 (-)
LOC103024438 LOC108426008 other downstream 1324366 33307993 ~ 33318351 (-)
LOC103028031 LOC108426040 other downstream 1406839 33214322 ~ 33235878 (-)
G171553 NA other downstream 1466433 33174053 ~ 33176284 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other downstream 1866699 32758507 ~ 32776018 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other upstream 266182 34933012 ~ 34959753 (-)
G172060 NA other upstream 554885 35221715 ~ 35222225 (-)
dnajb11 dnajb11,LOC107731764,LOC107690604,LOC107659888,LOC107595843,LOC107719809 other upstream 567377 35234207 ~ 35299796 (-)
olig2 olig2,olig3,LOC107731746,LOC107719825,LOC107659900,LOC107690629,LOC107569749 other upstream 702553 35369383 ~ 35371404 (-)

Expression


Co-expression Network