G172007


Basic Information

Item Value
gene id G172007
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 34785639 ~ 34785893 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU232809
ccactaccagatcaggagaatctctcgctatctttaataaactcctgaagacagagctcttcaaagagtacttactctcctaacacctctaactaactaccttctactaccagatcaggagaatctctcgctatctttaagaaactcctgaagacagagctcttcaaagagcacttactctcctaacacctctaactaactaccttccactaccagatcaggagaatctctcgctatctttaataaacttctgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232809 True 255 lncRNA 0.41 1 34785639 34785893

Neighbor

gene id symbol gene type direction distance location
fgf14 fgf14 coding downstream 26062 34550426 ~ 34759577 (-)
nalcn nalcn coding downstream 340400 34323173 ~ 34445239 (-)
zic5 zic5 coding downstream 758801 34021969 ~ 34026838 (-)
LOC103047371 LOC103047371 coding downstream 910334 33870988 ~ 33875305 (-)
gpr183 LOC103047691,LOC108426030,LOC107740920,LOC107668870,LOC107569509,LOC107600423,LOC107681323,LOC107748620 coding downstream 944024 33838702 ~ 33841615 (-)
LOC111194948 NA coding upstream 27534 34813427 ~ 34815919 (-)
LOC111194949 NA coding upstream 33203 34819096 ~ 34821789 (-)
ankrd44 ankrd44,LOC107719801,LOC107595853,LOC107659898 coding upstream 54482 34840375 ~ 34878649 (-)
sf3b1 sf3b1,LOC107731751,LOC100380860,LOC107690614 coding upstream 94612 34880505 ~ 34896212 (-)
hspd1 hspd1,LOC107690611,LOC107569661 coding upstream 124268 34910161 ~ 34920697 (-)
G171994 NA non-coding downstream 118809 34642717 ~ 34666830 (-)
G171992 NA non-coding downstream 171090 34613708 ~ 34614549 (-)
G171982 NA non-coding downstream 205820 34486295 ~ 34579819 (-)
G171979 NA non-coding downstream 225256 34471788 ~ 34560383 (-)
G171768 NA non-coding downstream 617993 34167387 ~ 34167646 (-)
G172019 NA non-coding upstream 27373 34813266 ~ 34819641 (-)
G172027 NA non-coding upstream 47830 34833723 ~ 34834376 (-)
G171995 NA non-coding upstream 49164 34835057 ~ 34835412 (-)
G172032 coq10b,LOC107569649,LOC107690612,LOC107731759,LOC107659895,LOC107719803 non-coding upstream 112316 34898209 ~ 34908956 (-)
G172034 NA non-coding upstream 136308 34922201 ~ 34924365 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other downstream 511850 34255377 ~ 34273789 (-)
LOC103024438 LOC108426008 other downstream 1467288 33307993 ~ 33318351 (-)
LOC103028031 LOC108426040 other downstream 1549761 33214322 ~ 33235878 (-)
G171553 NA other downstream 1609355 33174053 ~ 33176284 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other downstream 2009621 32758507 ~ 32776018 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other upstream 147119 34933012 ~ 34959753 (-)
G172060 NA other upstream 435822 35221715 ~ 35222225 (-)
dnajb11 dnajb11,LOC107731764,LOC107690604,LOC107659888,LOC107595843,LOC107719809 other upstream 448314 35234207 ~ 35299796 (-)
olig2 olig2,olig3,LOC107731746,LOC107719825,LOC107659900,LOC107690629,LOC107569749 other upstream 583490 35369383 ~ 35371404 (-)

Expression


Co-expression Network