tmtc4 (tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561)


Basic Information

Item Value
gene id tmtc4
gene name tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 34255377 ~ 34273789 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU232732
ttgtgaGCTCTCAATCTAAAAATGGTCTTGTATGTTTGGTATTGGGATCTAATTCAAAGTATCAGTATTGAAAAATTTGAAAGATTTTCAAATGATACCCAGCCCCGAACATGATTAGACCGGAAGAGCAGGAATCAGCAATGCTTGAAATTTATGTATTAAAAGCtttgtgtgttgttttaaaGCCGGTCTTCCCCTGCCGTGTGGAGAATGCCCCGATTCCAAGACAGAAACTCTTTAAGCAGACACTTCTCCCGGCCAGGTTGCTGCTCCCCGGAGTGTCTTGGCATGCTGCATTTTCACTGCcaaaaaaagcacacaaaaaaaaaaaaatcttggcaCCAGTAACTTCTCCCTCAGCCTCATCTTGTCCCAAGACCGCTCAAAGTAAATTACCAAAAAATTGGAAATGAATTTCTTCCGTCCTTGTTTGCCTCTGGAGGATGGCTGGGAGACGTAGTGGCGGGCGGGGCGCGGGGCTTGAGTCATGTTCAGACTCCCGCGGCCGAGGAGAATCTCTGCTGCTCATGAATTAGATAAGGGCCGGCCAGGATGATGGGACCTCTCTGACTCTGTGGTCAAAGCGAGTTTTGACACCCGAATCAATAAGTCAGCAGCCCTTGTGTTGAACCCTAATTAGGAAACTAAAGCACTCGACCGTGTGCTGAGAGGAAAAACTCGTGTGGACACTGCTGACAAATGAGCCGCTGATCCGTATGTGTAAAGAAGGCTGCTGCTACAAAACAACCagctttttgttcttttttttaaaagtaaaacacttttttgttagcATGCCTGtgtcattgtttgtttttatattgatCTTTAGTTATGTCATTTGATATCTCTCATAggatcattttaaaaaaaaggacaacaaaaaatattaatctttatatgtttaattatacCACACttgttctgaccctgcaatgtaattagctgagaggcgttctaagagtgccattatcagccggtaatgcactgtaaccaaagctcctCCAagtacagctaaaaaaaaataaaataaaaagagagaccactaaaaatgagtttctttgattttaccaaatttcgTAAGATAGACGATCACAACCCATCAAgcctgcttgaacttttgcaccaggagtaaaggcacaaagttatccaaaagcagtgtgcaagactggtggaggagaacatgatgccaagatgcatgaaaacagtgattaaaaagatggatgatcacaagccctaAAACCAAGCTAacctgcttgattttttgccccaggagtattggcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatggaaactgtgattaaaaaccaatcagggttattcccccaaatattgatttctaaacttttttttgttgtttcagccatttctcattttttttgcaaataaatgctctaaataacgatatttttatttggaatttgggagaaatattttccgtagtttatagaataaaacaacatgttcattttactcaaacataaacctataaatagcaaaatctaaaGAAAAACTGGTCTTTTAATTTCTTCTAGAGCTATATATACTAATTTGTAATCATCgtcatgtaattaaaaaaaaaaagtgcaataatataagaatgtatttcaaatgttgGCCCttttataagtgttttttttaagcgttTGTGTAATTGCAGGCAACCTGGCTCAAGCAGAGTTAATAGGAAAAGAGGCCTTGAAGATATTACCTAAAGACCACACCATCATGTTCTCTTTAGCCAACGTGCTGGGAAAACAGCAGAAATACAAGGAGTCGGAAGGTTTTTTTCTAAATGCACTGAAGATCAACCCCAATGCTGCCAGTTGCCATGGCAATCTCGCTGTTCTGTACCACCGCTGGGGGAAGCTGGACTTGGCTAAGAAGCATTATGAACTCTCTTTAAAACTAGACCCCAAAGCTCCAGGGACCAATGAGAACTACAACATGCTGAAACGCAAGCTTGAGCAGCGGCAGAGGACAGCTGGATAATACAGCTTTTTTGATATTCCAGACGCGTGCCATGAATTCCACCTTTGTATGATGTTCACATTGAGAAAACGTGAT
>TU232733
attcaaattttctgagacactaatttttgggttttcattggctgtaaaccgtaatcatcaacaataaaataaataagcaattaaaatagatcactctgtgtgtaatacatctatataatatacgagttaaacattttcaaaagaattactgaaataaagtaacttgttaatgatatccaattttttttagatactcTAGCATGTATACTTTTACATGATAACAAGTAATACCAAAaagcttttgtatttatttaaaaatgtcatttgCTGTTCACTGTAATTGATCTGTAATGGcaacatgcatttatttatttattttttctacaaatattataaatgttACATGTGAAAGACTGTCCACCTATAGATACACACACGTGTGGAAGTCCGTGTGGATGGAGAGTGTCATAATCGTAACCTGAGTGAGTGTTCTCATTAGATGTGCCCTTGACCGACACCTCAGGGGGAAAGGAAATGATCTCTGCCTCCTCCCAAACCTACTCACTCATTTTTTCTCTCCTCCAACTCCCAAGTATAGCTACTGGCTGCAGCTCTGTGCGCGAGGTGCGAACCTCCATTCTGCAGATGCTGAGCATCAGGTGCACTCGAGACGCATGGGGTCCTCTCGCATAATTAGTCCACCCTTTACACCAATTAACTTTccttccccctttttttttttttctcttcttcggCTGATCACAGAACAGCATGAGCCGTTAACTCAAGTAACTACTCTCCAGTGCTCTTGTATAGCTTAGTGATGTCACTACAGTTATCATCTTCTGGAGTCTTGGGCtaaaattaaagtatatttatatagtatataataaagTGTACTTTAATTGCAGTGCTAGATTTTAGATACTTCTTATTTCTATAGTATAAGCGAAAGTAAAGTAGGATTATGTGGAAAGAGCTTTTCctaattcttatttatttaattaaacttaGTCACCACTAAAGCTAACAAGTATGAATTGTCTGAGTATTTTGTGCCTATTGTGCTACTTCCAAATATGAGTGCACTGAATGTTTGGCTGCATATATAAAACAACTGGAATACATCAGGTTTCATGCTCTATTCAACATACAATTACATCATTCACTTACAATGTAATTTGGTTATAAGATGAACATAAaatccttatttttttccaagaaTCACCAGTGCGCCTAAAAATCCGGTACACCTTATGAATAAATTCTagtagtcaggtattaaggagcaataaagccactctACTAAAGTGAAGAGTTATACAGGactttcaggattagcggctaaccacagtggtgagtatatcagactgtagtctgtgtgttcactgtgttaaaataagctaggtgtgacgaactgctagctgatagcgccctggctcaccagaacactcagggttcctcagtgtagcgctgtcgggtagcatttactagcgctaagcaaagctaactgcagctagcgcAGCTgctagatgttcattgatagtgccacttataatgcatgtttaaaataagATGAAAAATACTATTTAATACAATAGATTACCATTTAAATTCATATTGTTCTTTCTCTGGTTTTGGCctaaaaaatggtttatctcctgaaagtttgtatttattttcaatcaatcaCTGACAGTAGGAGATGAACCTGTCATTAGAAAATCACTGGGACCAATTTTAAGATTACTACTGGAATTTAGAAAATAAGaattttgtttatataaataaatctggtctattaaaacagtgtttgtgaGCTCTCAATCTAAAAATGGTCTTGTATGTTTGGTATTGGGATCTAATTCAAAGTATCAGTATTGAAAAATTTGAAAGATTTTCAAATGATACCCAGCCCCGAACATGATTAGACCGGAAGAGCAGGAATCAGCAATGCTTGAAATTTATGTATTAAAAGCtttgtgtgttgttttaaaGCCGGTCTTCCCCTGCCGTGTGGAGAATGCCCCGATTCCAAGACAGAAACTCTTTAAGCAGACACTTCTCCCGGCCAGGTTGCTGCTCCCCGGAGTGTCTTGGCATGCTGCATTTTCACTGCcaaaaaaagcacacaaaaaaaaaaaaatcttggcaCCAGTAACTTCTCCCTCAGCCTCATCTTGTCCCAAGACCGCTCAAAGTAAATTACCAAAAAATTGGAAATGAATTTCTTCCGTCCTTGTTTGCCTCTGGAGGATGGCTGGGAGACGTAGTGGCGGGCGGGGCGCGGGGCTTGAGTCATGTTCAGACTCCCGCGGCCGAGGAGAATCTCTGCTGCTCATGAATTAGATAAGGGCCGGCCAGGATGATGGGACCTCTCTGACTCTGTGGTCAAAGCGAGTTTTGACACCCGAATCAATAAGTCAGCAGCCCTTGTGTTGAACCCTAATTAGGAAACTAAAGCACTCGACCGTGTGCTGAGAGGAAAAACTCGTGTGGACACTGCTGACAAATGAGCCGCTGATCCGTATGTGTAAAGAAGGCTGCTGCTACAAAACCCATCAAgcctgcttgaacttttgcaccaggagtaaaggcacaaagttatccaaaagcagtgtgcaagactggtggaggagaacatgatgccaagatgcatgaaaacagtgattaaaaagatggatgatcacaagccctaAAACCAAGCTAacctgcttgattttttgccccaggagtattggcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatggaaactgtgattaaaaaccaatcagggttattcccccaaatattgatttctaaacttttttttgttgtttcagccatttctcattttttttgcaaataaatgctctaaataacgatatttttatttggaatttgggagaaatattttccgtagtttatagaataaaacaacatgttcattttactcaaacataaacctataaatagcaaaatctaaaGAAAAACTGGTCTTTTAATTTCTTCTAGAGCTATATATACTAATTTGTAATCATCgtcatgtaattaaaaaaaaaaagtgcaataatataagaatgtatttcaaatgttgGCCCttttataagtgttttttttaagcgttTGTGTAATTGCAGGCAACCTGGCTCAAGCAGAGTTAATAGGAAAAGAGGCCTTGAAGATATTACCTAAAGACCACACCATCATGTTCTCTTTAGCCAACGTGCTGGGAAAACAGCAGAAATACAAGGAGTCGGAAGGTTTTTTTCTAAATGCACTGAAGATCAACCCCAATGCTGCCAGTTGCCATGGCAATCTCGCTGTTCTGTACCACCGCTGGGGGAAGCTGGACTTGGCTAAGAAGCATTATGAACTCTCTTTAAAACTAGACCCCAAAGCTCCAGGGACCAATGAGAACTACAACATGCTGAAACGCAAGCTTGAGCAGCGGCAGAGGACAGCTGGATAATACAGCTTTTTTGATATTCCAGACGCGTGCCATGAATTCCACCTTTGTATGATGTTCACATTGAGAAAACGTGAT
>XM_022680006.1
TAATTTAGCCACGTATTGGAGCTGTGTTTTGTAGTTTACCTGCCTGAATGTTAAAGTAGATAAATCCTGCGTTTATTCCGCTGAACTGGACTCGCTGTTTAGGGTAAAACCCTGCGGTTCGCCCGGAGTAAGCTGCTGGTTGCTGCTGTGTTGTGTAGGTTATcattagcagcagcagcttggctgtgtgtgtgtgtagacggTGTACTCGTGTACAGTAGCGCTAGCCCCGGTCTGTAAGAGCTGTTACTCTGATTTTCAGGCTGTATGAACCGGTATGGGGATGATTTCAGATGTTCCGCTTGTTTAATGGGACCGTTAAGGATCAGCAGACTGTTAGCTACGCTAGCTAGCTGTTGCTATTGCTAGCTAGCCTACCTGTCActtggctgctgctgctgctagtctACAGGGCACCAGTGCAGCTAACTCTAGTTTCTCAGCATGTAAATGGAGTGAATGGAGAGGCAGCATGACCAGCGGTCCCAAAAAACACCATGATACATCCTGAACCTTCCTGGGACCATCACGTCCCTTTACCAAAGCTTGGACCGCTTTATTCACGGCTCTTGGTCGCCTTGGTTTCCCTGATCTGTTTCATAAACAGCTATGATGGGGACTTTGTCTTTGATGATTCTGAGGCAATTCTCAATAACAAGGATTTAAACCCAGATACTCCTCTGAGTAACATCTGGAAAAATGACTTCTGGGGAAGCAACCTGAGCAGCAACTCTAGCCACAAATCCTACAGGCCACTGACTGTTCTCACCTTTAGGCTAAACTACCTCTTGGCTGGAGGACTGTACCCGGTTGGCTTCCACGTGCTGAACATCGGCCTCCATTGTGTTATCTCTGCGTTAATGATTGATGTTTTTGCAACATTAATTGGTGGCCTGGCCTGTGACGGCACAGCTAAAAGACTCGGCCACGTTCCGAAGGCTTCCCTCCTGGCCGCGCTCTTCTTCGCTGCACACCCGGTTCACACAGAAAGTGTGGCTGGTATTGTGGGCAGGGCAGACCTCTTATGTGCCCTTTTCTTCCAGCTGTCCTTCCTTTCTTACTGCAGAGCATTTCAAGATGGGGACAAGAGTGACAAATTCTCAGTGTCCTGGATCGTGGTCAGCCTGCTGCTGTGTGCGGTTGCCATGTTGTGCAAGGAGCAAGGCATCACAGTTTTGggtgTGAATGGTGTGTTCGATATTCTCGTTATCTGCAATCTTGATATCTATGAGTTGACTCACAAGCTGCTGGTCCGGAGGAAGACTGCAGATGTTGGAGTTTGGATCAGTAGAGGGCTGATCATCAGGCTGGCTCTCCTGCTTTTTTGCGGCTCTTTGCTTTTGTATGCGAGGTGGAGGATCATGGGTACAGGGCCGCCAGCCTTCACTGAGGTAGACAATCCAGCATCCTTTGCTGAGAACGTTTTTCTTCGGATTGTGAACTATAATTACTACTACTCCTTGAATGCATGGCTGCTGCTGTGTCCCTGGTggctgtgttttgattggtcaatGGGCTGTGTACCTCTTATTAAATCAGCCGGTGACTGGAGAATTGtctggctgctgctgctctgggcCTGCCTGATTGGCTTGATAAAGCAAGCTCTCTGCTCCCCAGACAGCAGTAAGAGAAGGACTCTGACGTTCGGCCTGGTGCTGCTGGTCATCCCCTTCCTTCCAGCCAGTAACCTGTTCTTCCGCGTGGGCTTTGTGATAGCTGAACGGGTGCTGTACCTCTCCACAGCAGGCTACTGCCTCGTTCTGGCCTATGCCGGGGCCCATTGCTGCTGCCGCTGGAGAAAGCACAAGAAGCTGCTGCAGGCGGCCATGCTGGCTCTGCTGGGCATGAATGTGGTGCGATGTGCCCATCGCAGTCAACAGTGGACATCTGAGCAGAGCCTGTTCACCAGTGCCTTGTCTGTCTGCCCACTCAATGCCAAGGTTCATTACAATGTTGGCAAAAACCTCGCTGACCACGGCAACCAAAGTGCTGCAATCAAGTACTACAGAGAGGCTGTGAGGTATGCaATACACACACGTGTGGAAGTCCGTGTGGATGGAGAGTGTCATAATCGTAACCTGAtgttttttttaagcgttTGTGTAATTGCAGGCAACCTGGCTCAAGCAGAGTTAATAGGAAAAGAGGCCTTGAAGATATTACCTAAAGACCACACCATCATGTTCTCTTTAGCCAACGTGCTGGGAAAACAGCAGAAATACAAGGAGTCGGAAGGTTTTTTTCTAAATGCACTGAAGATCAACCCCAATGCTGCCAGTTGCCATGGCAATCTCGCTGTTCTGTACCACCGCTGGGGGAAGCTGGACTTGGCTAAGAAGCATTATGAACTCTCTTTAAAACTAGACCCCAAAGCTCCAGGGACCAATGAGAACTACAACATGCTGAAACGCAAGCTTGAGCAGCGGCAGAGGACAGCTGGATAATACAGCTTTTTTGATATTCCAGACGCGTGCCATGAATTCCACCTTTGTATGATGTTCACATTGAGAAAACGTGATTCAATTAAATTGTCTTAATTTATACTGTA

Function

symbol description
tmtc4 Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; neural plate; and retinal ganglion cell layer. Orthologous to human TMTC4 (transmembrane O-mannosyltransferase targeting cadherins 4).

NR:

description
transmembrane and TPR repeat-containing protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232732 False 2122 lncRNA 0.40 3 34255406 34257957
TU232733 True 3521 lncRNA 0.38 5 34255406 34259747
XM_022680006.1 False 2551 mRNA 0.49 16 34255377 34273789

Neighbor

gene id symbol gene type direction distance location
zic5 zic5 coding downstream 228539 34021969 ~ 34026838 (-)
LOC103047371 LOC103047371 coding downstream 380072 33870988 ~ 33875305 (-)
gpr183 LOC103047691,LOC108426030,LOC107740920,LOC107668870,LOC107569509,LOC107600423,LOC107681323,LOC107748620 coding downstream 413762 33838702 ~ 33841615 (-)
gpr18 gpr18,LOC107748622,LOC107681324,LOC107600424,LOC107570094 coding downstream 432323 33820164 ~ 33823054 (-)
klf5 klf5,LOC108426007,LOC105912602,LOC105007142,LOC103357491,LOC104962226 coding downstream 711519 33536024 ~ 33543858 (-)
nalcn nalcn coding upstream 49384 34323173 ~ 34445239 (-)
fgf14 fgf14 coding upstream 276637 34550426 ~ 34759577 (-)
LOC111194948 NA coding upstream 539638 34813427 ~ 34815919 (-)
LOC111194949 NA coding upstream 545307 34819096 ~ 34821789 (-)
ankrd44 ankrd44,LOC107719801,LOC107595853,LOC107659898 coding upstream 566586 34840375 ~ 34878649 (-)
G171768 NA non-coding downstream 87731 34167387 ~ 34167646 (-)
G171732 NA non-coding downstream 191882 34063152 ~ 34063495 (-)
G171716 NA non-coding downstream 250505 34002667 ~ 34004872 (-)
LOC111194945 NA non-coding downstream 349341 33901546 ~ 33906036 (-)
G171659 NA non-coding downstream 421291 33833826 ~ 33834086 (-)
G171979 NA non-coding upstream 197999 34471788 ~ 34560383 (-)
G171982 NA non-coding upstream 212506 34486295 ~ 34579819 (-)
G171992 NA non-coding upstream 339919 34613708 ~ 34614549 (-)
G171994 NA non-coding upstream 368928 34642717 ~ 34666830 (-)
G172007 NA non-coding upstream 511850 34785639 ~ 34785893 (-)
LOC103024438 LOC108426008 other downstream 937026 33307993 ~ 33318351 (-)
LOC103028031 LOC108426040 other downstream 1019499 33214322 ~ 33235878 (-)
G171553 NA other downstream 1079093 33174053 ~ 33176284 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other downstream 1479359 32758507 ~ 32776018 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other downstream 2351209 31895832 ~ 31904168 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other upstream 659223 34933012 ~ 34959753 (-)
G172060 NA other upstream 947926 35221715 ~ 35222225 (-)
dnajb11 dnajb11,LOC107731764,LOC107690604,LOC107659888,LOC107595843,LOC107719809 other upstream 960418 35234207 ~ 35299796 (-)
olig2 olig2,olig3,LOC107731746,LOC107719825,LOC107659900,LOC107690629,LOC107569749 other upstream 1095594 35369383 ~ 35371404 (-)

Expression


Co-expression Network