gpr18 (gpr18,LOC107748622,LOC107681324,LOC107600424,LOC107570094)


Basic Information

Item Value
gene id gpr18
gene name gpr18,LOC107748622,LOC107681324,LOC107600424,LOC107570094
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33820164 ~ 33823054 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007227780.2
TTCCTCTACCCATGCTGAGCAGCGCTCGAGTTTACATGACTTACCACCACATCACAAACCCTCCGAATGGGCCCGAAGCAGTTACTGCACAAGCGTGAGAGCATGTAGATCACTGAGGTAATTCATTATGGAACACAACAATTCTTCATCTTCAGACTTCATCATTGAGGGCCATACAGTGTTCAGAATAGCCAGCCTGGTGTTCTATGGCTTCATATTCTGCGTGGGCCTGGTGGTGAATCTCACTGCTATCTGGGTCTTTGCTCTGACCACTAAAAGAAGGAGCTCCGTCACCGTCTACATGATCAATGTGGCCGTGGTGGACCTTCTCTTCATTCTGATTCTGCCCTTCCGCATGGTTTACTACAGCAGGGACTACTGGCCCTTTGGAGACATGTTCTGCAGGGTCAATGCCGCTCTGACCATTCTCTACCCCTGTCTGGCTCTGTGGCTCTTTGCGCTCATTAGCGCTGACCGCTACGTCGCAATAGTGCAGCCGCGGCACAGCAAGGAGCTGAAGAACGTTAACAAGGCCATGCTGTCCTGCGCCGGCGTCTGGATCATGACCCTCGGCGGTGCGGCGCCTCTACTCTTCCTCGAGGAAGATCCGGACGCATTCTCCAACCATACCACCTGCATGAAGATGCACGACATCGTCTACCTACGCCGAGACAACCCCGTTCACTTTGCCCGCCTGGCATTCTTCTTCCTGGTGCCAATGTTCATCATGGTGGGCTGCTACATCGTCATCGTGGACAACCTCGTCCACGGACGCACGTCCAAGCTCAAGCCCAACGTCAAGCAGAAGTCCATCCGCATCATCATCACGCTGATCGTGCAGGTGCTGGTGTGCTTCGTGCCCTTCCACATCTGCTTTGTGTTCCTGATGCTGGAGAACACCGGCCAGGACTACAGCACATGGGGTGCCTTTACCACCTTCCTGATGAACATGAGCACAGTGCTGGACATCATACTCTACTATATCGTGTCCAAGCAGTTCCAGGACAGAGTGATCAGTGTGATCCTGTACAGGAACTACCTGAGAAGCGTTCGCAGGAAGAGCCGACACACTGGAAGCGTTCGCTCCCTCAGTAACCTCACCAGCGCCATGATCTGAGGAACAGTGCTACTGGGAATCTGCGTTCCCTTTGAACTCAAATGTAGGAATTTCCGAGTTCCTAAAAGGAAATTCTGTCTGGAACGTCTCTACAGGTCGGATTTCCTACTCATAAAGTCAGGAGAGCCTCATCAACTCCAAgatcagaatccaagatggctgcacctCACTTCAGCAGTagtgaaagcagtagtattatcccaactaaacttttatttt

Function

symbol description
gpr18 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in positive regulation of Rho protein signal transduction and positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in cytoplasmic vesicle membrane and plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human GPR18 (G protein-coupled receptor 18).

NR:

description
N-arachidonyl glycine receptor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08410 GPR18; N-arachidonyl glycine receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007227780.2 True 1336 mRNA 0.52 2 33820164 33823054

Neighbor

gene id symbol gene type direction distance location
klf5 klf5,LOC108426007,LOC105912602,LOC105007142,LOC103357491,LOC104962226 coding downstream 276306 33536024 ~ 33543858 (-)
LOC103022452 NA coding downstream 287556 33526414 ~ 33532608 (-)
LOC103024754 NA coding downstream 524057 33282954 ~ 33296107 (-)
LOC103027491 NA coding downstream 574512 33238965 ~ 33245652 (-)
LOC103028763 LOC108426041 coding downstream 607667 33202309 ~ 33212497 (-)
gpr183 LOC103047691,LOC108426030,LOC107740920,LOC107668870,LOC107569509,LOC107600423,LOC107681323,LOC107748620 coding upstream 15648 33838702 ~ 33841615 (-)
LOC103047371 LOC103047371 coding upstream 47934 33870988 ~ 33875305 (-)
zic5 zic5 coding upstream 198915 34021969 ~ 34026838 (-)
nalcn nalcn coding upstream 500119 34323173 ~ 34445239 (-)
fgf14 fgf14 coding upstream 727372 34550426 ~ 34759577 (-)
G171656 NA non-coding downstream 721 33819169 ~ 33819443 (-)
G171653 NA non-coding downstream 28577 33790483 ~ 33791587 (-)
LOC103021721 NA non-coding downstream 201622 33598874 ~ 33618542 (-)
G171627 NA non-coding downstream 296270 33522201 ~ 33523894 (-)
G171595 NA non-coding downstream 384632 33435145 ~ 33435532 (-)
G171659 NA non-coding upstream 10772 33833826 ~ 33834086 (-)
LOC111194945 NA non-coding upstream 78492 33901546 ~ 33906036 (-)
G171716 NA non-coding upstream 179613 34002667 ~ 34004872 (-)
G171732 NA non-coding upstream 240098 34063152 ~ 34063495 (-)
G171768 NA non-coding upstream 344333 34167387 ~ 34167646 (-)
LOC103024438 LOC108426008 other downstream 501813 33307993 ~ 33318351 (-)
LOC103028031 LOC108426040 other downstream 584286 33214322 ~ 33235878 (-)
G171553 NA other downstream 643880 33174053 ~ 33176284 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other downstream 1044146 32758507 ~ 32776018 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other downstream 1915996 31895832 ~ 31904168 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other upstream 432323 34255377 ~ 34273789 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other upstream 1109958 34933012 ~ 34959753 (-)
G172060 NA other upstream 1398661 35221715 ~ 35222225 (-)
dnajb11 dnajb11,LOC107731764,LOC107690604,LOC107659888,LOC107595843,LOC107719809 other upstream 1411153 35234207 ~ 35299796 (-)
olig2 olig2,olig3,LOC107731746,LOC107719825,LOC107659900,LOC107690629,LOC107569749 other upstream 1546329 35369383 ~ 35371404 (-)

Expression


Co-expression Network