LOC103024754


Basic Information

Item Value
gene id LOC103024754
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33282954 ~ 33296107 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680616.1
CAGAATGGTGTCACTCACCACTAGGCAGATCCGAGTGCTGGGGCCATTTCCTGTTATCAAAGGGGTTTCTACAACCCACAGACAAGACTTGAGCAAGACACACTTCAACACAGCCCTTCAGAAGTTCAGTCAGGCTGAGCTacaggaaagaaagacagcCAAACTTATTTCTCTCCAAGAGGGAATCTGGTGGAAGTGTTGAGAAGAGTGTCCTGCTGTTCCTGGCcttattttcttctcctctgcagAGGCCATGAGCTTGAGTGACCCGGTCACGTGCTACATCCTGGACGCAGTTCTGCTGCTTTACTGCATCATTTTCACTGCGCTGTACTTCAGAATAAAGtttGCAAGAATACAGTCTGATACTTCAGTGCCACAGGAGAGTGTCTATGAGGGGCTTAATAAGAATGCAATGACAGATGAGTATGAAACCCTCGCGGGGCAAAGCGGGCAGGCCGGTGGGCCCGTCAGACGGAATCGTGTACAGCAAGAGGAAGGCCAGTATGAGGCTCTGAGATCCCCATCAAACGACGATTACCAGGAGATCCCAAAGAAAGCCAAGCCTCGCAAGAGTAAAGCCAAAAGCAAAGAGtctgcagctgcagctgatGCCATCGAAATGGATCCCCTTCCTGCTTTACCATCACGTAGCtgaactaacacacacacacacacacacacaccttaaagACATGCTGAACATCTCCTGTAACCCTTTCCCCACATTTCATCCAGAGGAAGAATCTAAATTGGATGCTGCTTGTGAAATTTGTCTATGCAAAATCTCTTGTAGcataatatagaaatatattgttttatctaTTACTTAGAAAGCGTAAAAAATAGTTTCTTAAAAAAGTTATCTTaaaaatatgtagttattgtgctTATTTATGACTTGCTATGTGTTTAAAGCAGCTGAGCTGACTTTTAGTCCAGCAGGTGGTGCTGTAGTTCAGATTTCATgcattttccccattttcttgTTATTGAAGTATTGATCATAATTTGTATATAGGTAGAAACATGTcctgtaaatattaattataatgcTGAAGTATATTTCTCATTTGCATTTTAGACCTGCTATGCTTGTTtctcaaaatgttaaatttgtATAAATCCAGGACTGATTTTCTGTAAACTGTTGCCCAAGTAGCTGGATGATTTTACTTGCTAATTTTGATATAcaactactaataaaaaaaaaactttgggttGTATGAGAA

Function

GO: NA

KEGG:

id description
ko04664 Fc epsilon RI signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680616.1 True 1232 mRNA 0.41 8 33282954 33296107

Neighbor

gene id symbol gene type direction distance location
LOC103027491 NA coding downstream 37302 33238965 ~ 33245652 (-)
LOC103028763 LOC108426041 coding downstream 70457 33202309 ~ 33212497 (-)
LOC103029083 me3,LOC108426042,LOC107748144,LOC107756775,LOC107695468,LOC107595810,LOC101480202,LOC102214044 coding downstream 82267 33191783 ~ 33200687 (-)
dcaf6 dcaf6 coding downstream 113303 33137807 ~ 33169651 (-)
slc35a5 slc35a5 coding downstream 175215 33100934 ~ 33107739 (-)
LOC103022452 NA coding upstream 230307 33526414 ~ 33532608 (-)
klf5 klf5,LOC108426007,LOC105912602,LOC105007142,LOC103357491,LOC104962226 coding upstream 239917 33536024 ~ 33543858 (-)
gpr18 gpr18,LOC107748622,LOC107681324,LOC107600424,LOC107570094 coding upstream 524057 33820164 ~ 33823054 (-)
gpr183 LOC103047691,LOC108426030,LOC107740920,LOC107668870,LOC107569509,LOC107600423,LOC107681323,LOC107748620 coding upstream 542595 33838702 ~ 33841615 (-)
LOC103047371 LOC103047371 coding upstream 574881 33870988 ~ 33875305 (-)
G171555 NA non-coding downstream 103105 33179383 ~ 33179849 (-)
G171554 NA non-coding downstream 104629 33177919 ~ 33178325 (-)
G171546 f5,LOC107565953,LOC107748149,LOC107673674 non-coding downstream 154332 33127486 ~ 33128622 (-)
G171525 NA non-coding downstream 183023 33023079 ~ 33099931 (-)
G171523 NA non-coding downstream 317717 32960604 ~ 32965237 (-)
G171569 NA non-coding upstream 7060 33303167 ~ 33305460 (-)
G171573 commd6 non-coding upstream 24578 33320685 ~ 33322970 (-)
G171580 tbc1d4 non-coding upstream 68697 33364804 ~ 33369961 (-)
G171587 tbc1d4 non-coding upstream 83250 33379357 ~ 33381869 (-)
G171595 NA non-coding upstream 139038 33435145 ~ 33435532 (-)
LOC103028031 LOC108426040 other downstream 47076 33214322 ~ 33235878 (-)
G171553 NA other downstream 106670 33174053 ~ 33176284 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other downstream 506936 32758507 ~ 32776018 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other downstream 1378786 31895832 ~ 31904168 (-)
G170854 NA other downstream 4595275 28686050 ~ 28687679 (-)
LOC103024438 LOC108426008 other upstream 11886 33307993 ~ 33318351 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other upstream 959270 34255377 ~ 34273789 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other upstream 1636905 34933012 ~ 34959753 (-)
G172060 NA other upstream 1925608 35221715 ~ 35222225 (-)
dnajb11 dnajb11,LOC107731764,LOC107690604,LOC107659888,LOC107595843,LOC107719809 other upstream 1938100 35234207 ~ 35299796 (-)

Expression


Co-expression Network