G171587 (tbc1d4)


Basic Information

Item Value
gene id G171587
gene name tbc1d4
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33379357 ~ 33381869 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU232262
GTACACTGCACTATAtaacaaatgaaataatgagtttttacggttttttacatccaattttctattttcgcatttagcctcaaacgaaaaatctgaaaatttacttaataaacattacactgactGTTTAGATCAAGTTTTAACTGGTTAACTCATTCCTACTCTCTCATACTACTAAATACACACTTGAATCACCAGTATGGAACATCACTCTTTATGGTTCTCTGTACATTAAGCTGCTTTAATAACAGCACAACGTGACCCATCatgtttaaccatgttttactCAATCATCTGCATGTTAATGGTTCTCACCTGGTCACACAGCTTGACGGGAATTACACTTATGGAAAACtgagaaattacaaaaaaaaaaaaaaaacatctgaacaACATTACAGTACTACAGGAGAAACCTGTATATTGCTTCAGACAGCCATCGtacaaaaagataaagagataaaacaaaaaacagccaCCTTAATCAAGACAGAAGCTGAAGTGCCAGCATACAAATCAACTAATCCCACTCCACACCTACAAAATGTTAAGCAATATTCATTTCTCCTAATATTTCATgacattttaatacaaaaatgtcGTACTTATCACACCCTTTAGGGCAGAGGGGATGGGGAGCTTTACACAGATTCACTCAATCCATGTTAAATAGCTGCACTTCACCGACATGGCTGCAGCTGGAGGGTCCTTTTCTCAGGCAAGCTGCACATAACTGAAGTACTTTTTATCAACAGGGATAAAAacaacaagtttttttttgcaaattaagtGCGCGGCATTTTGCATAGCTTCACCAGCTAGCCTGCGTTCATTAACAATGCGTGAAATAATCTGCATAAATCACTTATAAGGCTTCGTTGACGGATAAGTTCTGACGCAAGaggctttttaattttttggggttttttttttctttcagcaaATAAGACACATAAGAGGGGAGTTACGAGAAGTTATCAGTCATGCTGCAGTCAGAGCCCTGCACGGACGCACTGAGACACACGGCGCTAAGCATAATTTAACAATAATATTTGTGCAAATGTCAAGCACAATTTTGGAGTTTGGAGTTACACACAGCACGAAAGACAAATTTCATTTGGGGTCAAGCgagcttttgttttgtttctgcatttctgcattTTGTTTCTGTAGTATTTGTATACGGTGTATGAACTACGCTCATAATCGAAATCAGCTTCGCAAACAGACgtttctcacacacatacacacagattagagacagagagagagagagagaaagagagagagcagtatgCAAAACTAACGCAACAGCAGACttgcttgctttttttttttttttttcgtctctTTTGACGTGATGAATGATTCGCCTTGAAGTACATTCAGTAACAGGTGAAGTGCCAGATAGGCGTAGGAGTTCTGGAGAGCAGGTTAAATTTGGATGACACTGCTAAGTCACAGCGGAAACTCAGAGACGGTTTCATTTCCTGCTTGAACTTTGGGTTAAGCTCTTTCAGCACAGTGTCGATTTGACGGCCTAAATATTTTGGTTTCTCGGGATGATTGAGTCACACTCCCTTTTGTTGCATTTCATCAGGAGAAGCTCTCCAGCGAGAGCGAAAAgacgaaaagaaaaaaaatatatataaaaatgaagaaaagcgCTCCCATAACATACGTCGACATCAGGGCAGCGCTCCTCAGTACGCCCACAGCCGCGAGTCTCACTGATCTTTGGAAAGAAAATACATTCGTATCGTTTTCAAGTATTTTCAAATTCACGAATCCACACAGGCTGTAGCGCTGCAACGCTTCCTTTCTGTTCTTATCACTTAGGGAAGCCACCTTCTTCTGCACCTGAAGTCCTGAAGTGAACAAATCGGATCAGAGCAAATGTGACACAAGCAGACGCAGACTTCCTATTCCCATTTCCATTTCCCACTCGCTATTTCCTTTGCAGCAGTCTTTCCTTTCCATGCTTTATCGGCATGGAAGTAAAATtgttttttgcttcttttttttttttcttcagaaggCTACACGGCTAGGGGCTAGGCTACCCTCCGATAGCTCCAACTCTAGCCCTGATCATCACAGTGGATACCCAAGCTTCCACAGTATGTGTGAACTCTCATCATCAGCCCATAAATGCTGCGAGCTTTGAGAGAACCATCAGAACACACATGATGGTCGTCTCAAACGTCTCAAATGAATCGACTCTTTACACTGTGGATTCGTTTGCCGAATCAAGGCTTCTTGCTGGCTGCTTTGGTTTTGCCGTTGCTGCCGGACTTCAGCTGGGTCATCTCCACTTCTGCAGCCGAGTCCTGCGGGAGGCTGCTGCGCATGCGCTCGATGGTCTTCTGGTAGGACGTCTTCTCCTGCTCCAGCGAGCGAATCAGGTGCTTCATCTGACTCTCGCGAGCCAGAAAGCTCTCCACGCTGGTCTCCAAACTCTGGATCTTCACCCGCGCC

Function

symbol description
tbc1d4 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Is expressed in myotome; pancreatic bud; pronephric duct; and segmental plate. Human ortholog(s) of this gene implicated in acanthosis nigricans. Orthologous to human TBC1D4 (TBC1 domain family member 4).

NR:

description
PREDICTED: TBC1 domain family member 4 isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232262 True 2478 lncRNA 0.42 2 33379357 33381869

Neighbor

gene id symbol gene type direction distance location
LOC103024754 NA coding downstream 83250 33282954 ~ 33296107 (-)
LOC103027491 NA coding downstream 133705 33238965 ~ 33245652 (-)
LOC103028763 LOC108426041 coding downstream 166860 33202309 ~ 33212497 (-)
LOC103029083 me3,LOC108426042,LOC107748144,LOC107756775,LOC107695468,LOC107595810,LOC101480202,LOC102214044 coding downstream 178670 33191783 ~ 33200687 (-)
dcaf6 dcaf6 coding downstream 209706 33137807 ~ 33169651 (-)
LOC103022452 NA coding upstream 144545 33526414 ~ 33532608 (-)
klf5 klf5,LOC108426007,LOC105912602,LOC105007142,LOC103357491,LOC104962226 coding upstream 154155 33536024 ~ 33543858 (-)
gpr18 gpr18,LOC107748622,LOC107681324,LOC107600424,LOC107570094 coding upstream 438295 33820164 ~ 33823054 (-)
gpr183 LOC103047691,LOC108426030,LOC107740920,LOC107668870,LOC107569509,LOC107600423,LOC107681323,LOC107748620 coding upstream 456833 33838702 ~ 33841615 (-)
LOC103047371 LOC103047371 coding upstream 489119 33870988 ~ 33875305 (-)
G171580 tbc1d4 non-coding downstream 9396 33364804 ~ 33369961 (-)
G171573 commd6 non-coding downstream 56387 33320685 ~ 33322970 (-)
G171569 NA non-coding downstream 73897 33303167 ~ 33305460 (-)
G171555 NA non-coding downstream 199508 33179383 ~ 33179849 (-)
G171554 NA non-coding downstream 201032 33177919 ~ 33178325 (-)
G171595 NA non-coding upstream 53276 33435145 ~ 33435532 (-)
G171627 NA non-coding upstream 140332 33522201 ~ 33523894 (-)
LOC103021721 NA non-coding upstream 217005 33598874 ~ 33618542 (-)
G171653 NA non-coding upstream 408614 33790483 ~ 33791587 (-)
G171656 NA non-coding upstream 437300 33819169 ~ 33819443 (-)
LOC103024438 LOC108426008 other downstream 61006 33307993 ~ 33318351 (-)
LOC103028031 LOC108426040 other downstream 143479 33214322 ~ 33235878 (-)
G171553 NA other downstream 203073 33174053 ~ 33176284 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other downstream 603339 32758507 ~ 32776018 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other downstream 1475189 31895832 ~ 31904168 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other upstream 873508 34255377 ~ 34273789 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other upstream 1551143 34933012 ~ 34959753 (-)
G172060 NA other upstream 1839846 35221715 ~ 35222225 (-)
dnajb11 dnajb11,LOC107731764,LOC107690604,LOC107659888,LOC107595843,LOC107719809 other upstream 1852338 35234207 ~ 35299796 (-)
olig2 olig2,olig3,LOC107731746,LOC107719825,LOC107659900,LOC107690629,LOC107569749 other upstream 1987514 35369383 ~ 35371404 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G83662 NA non-coding CI01000013 null 8496043 ~ 8496249 (-)
mexican tetra (Astyanax mexicanus) G70522 NA unknown NC_035904.1 CM008307.1 1268767 ~ 1269404 (+)