LOC103028763 (LOC108426041)


Basic Information

Item Value
gene id LOC103028763
gene name LOC108426041
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33202309 ~ 33212497 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007227808.3
GGGGAGGGGCGTCGTGGCGCTGAAGGCctgcgagagagggagagacacctGCACGTTCTGGTTACGCGCACGAGCTCGGAGGAGCTTCAATTATGGACTCTTCTTCTTCAGATGAAGCGGATTAATAGAGGGTCAAAGAGTTTGTGGATTTTGATGAGCATTTCTGGGGGAATCTTCAGAGAGACAGTGCAGATATGGAGCAGAGGAGCAGAGTGAGAGCGGCGCTGCTCTGCTGCTGTCTTCTTCTCCCCGCAGAACTTCTAGCCATCCAGGTGACGGTTCCCCACACAGAGAGAAGCACAACTCTGTTTGCCTCCATCATCCTGCGGTGTGATTACTCtacttcagccaatcagcaggACGTTCTGGTTACTTGGCGCTACAAGTCCTTCTGCCTGGATCCAGTGATTCAGTATTACTCCACAGCATATCAGGCAGCTCTGACTCTCGGGCAGGACCCAGCAAACGACTGTCCAGACCGCCAGCGCACTGTCCGCACTGTCATTCAGAAGAGGGGCAGTAATGAACCCACACTGGGGATAGAATATCGTGAACGCAAGATCACCATCCAAAACAAAGCTGATCTGGTCATCACTGAGGTCATGTGGTGGGACAATGGCATGTATTTCTGCTCCATTGATGCAGCTGGCGACACCATAGGGGACTCTGATAAGGAAATCAGACTCATAGTGTACCATTGGCTGACAGTGCTGTTCATCATTATCGGGGCTCTTCTGCTGATCATACTGCTCGGCGTCTGCTGCTGTCAGTGCTGCCCTCAGAAGTGCTGCTGTTACGTACGCTGCCCCTGCTGTCCCAAGACATGCTGCTGCCCAGAGAAAGTGGTGATGCAACACAGGATGATTCGTGATGCTCAGAAAGCAATGGCACCTTGGCTGCATGGCCAGCCAATCTATTCTCCTATTGGATCAAATGGATCTTCTCAGGCAAACCCTCTACTGTACTCAGGTTCTTTCTCTGAGTACCCTTCTAAACACAATATCCCAATGGGGCCAATGCTTGTACCTCCACACCATCCTGCACCACCGATGGTACTTCCATATGGAGTCCAGGCCAATGGCAGCATGCATGGCAGTGGTAAGGGCAGCATGCATGGCAACAACCACATGTTGGATTTCCTGGAGAATCAGGTGAGAGCAGTGGATGTTGGCGCTCCACTGGTCCAGCATCCTGCTCAGTACATGGCAGCCCCTTTTCAGGCATTGCCTCCTCAGCAAATAGCCCTTCCACCTCAGCCTATGCAGCCCCTGACTCAAGCCGTACCCCACAACCCCGGGCCCCCCAGCATGCTCTCTGCCCTGGATGAAATGGGAGTGCACGGTGTGGAGCGTAGGGTCATCCAGTTACCCGCAATTGTGGGTCGAGCCCCAGGCCAGACCTCTCGCAGGGCACAGAGAGATAACCGCCCGGTACTGCGCTTCCACAGTCAGTCCAGCGGAAGCTCCAGCCGCTCAGCACATTACCGTGATTCCTCACGACGGGACACTGGGTCACCGCGCCGCGGGATCCTGCGCAGTTACAGCGATGAGTCAGACTGGGATGACAGGCGAGGAGGCCGAGGCTCCAGAGAACGCAGGGGAGGGTCGGGTGGGGATCTCTCACGCCCAAGAGTACGCAGCAAAGCTGAGCTGATCGAGGAGCTTCAGCGGGCCAACCCTCGGCGTGGCTCCTGGAGCTCAGAGGAGGACAGTTACAGAGGAGCTGCAAAATCCAGAGACAGAGCCTGGCCAGAGAATCCACCCAGTTACTCCTCCATCGACATCCACCCCGGCCACAGCAGGAGGACCAATGAACGCAGCTCGgATAAGAGCTCTCGTAGTGGCGTCAGTGTTGTGATCTGAAGAATCGAGCTGCCTTGTCCAGCATTTTCACCCCACCGCATCAGTGGATGCTTAAATACGTTTGACTCAGTTTCAGTAGCAGAGAATGATGATTTATGTAGAACTTGCTAAATTGTTTAGTAGTCAGCTGCCTAGTGCTCTCCCAGTGAGAAGAAAAGAttgattaatcattttaaaattgtttttcatttgtttcagttccttttaaataaatgattttcgtgacctttttttataattgtataaacatgttttatttttttatagtttgtgtgtttgctgttAAACAGTGCtatgttttatactgaaaataaTTAAGCTATAGTGGTATGGAATATTTGGGTGCCCCTGGTCATAATTTCTGTATCTTGAGTGAGTAGCTAAACAAGATTTCTGAAAGTAAATCAATATAATGATTATGCCTTTCTATAATATTGTAGCATCACTGAGTTTGAAGTAAAAAGACCAAACATATTCCTATTTGGCAGACAGAAATAATTGCAACCAGTAGTGGTTCTTACTTCTAATTGCAGCCACTGATTGACCCTTATTCTCCATCCACActaacaccaagagggtgagtAACTCTCCACCAGTGCAACCACCACAACCaaaagaataaatacaaataaacacaaaaaataataataacaccaaCAAAAAAAGGGCTGTCCAAAAGCAGACGTATCGGCAGCCTGTATGATACTTATACTTAGTATTTTCCATTGACTGACAGGACTTGTTTAGATGTTCCTTGGAAAACTTCTGATGCTGAGTATCTTAGAATACAATTACTGATAAAAGATCACCTCTCTCCCGCTGTCTATTAGAATTCAATAAACTGTTACTGATCGTGGATCAGCGTTCTTACTGTGAGAAGTTTGATAAATATGGACATTGGTGGAGAACAAGCCATAATTAGCATTAAACTGTAAAAGTGAATCTTCTTAACGTGTAAGATCTTTATAAAGTTATAGAGAGCTTAATAGATAAAGCAACTTTCCTTTCAAATTAACAGAAATTTTCACCAGGTTGGTCCAAACATGTGTGCAACTGAATAGTTAAGCTTTAGCTTGTGATTTCTGTGTTTACATTGATCTAGTTTGTGTGGTGATGGGTTATTTGTCACAtttgtggtgcttttttttcttgtgtacaGTATGAAAATTATGTATAACTACCTGCATGCATTTGCTTAACTGACTGTTTATACTTTATGCACCTGCAGAAGAAGTATggttttattctttttgttaattttttatagtGCTTGTACAGTGGTGCCCAGTTTAACCTCCCTCTTTTCTATTGTTCTACAGCATTATGCTCATTGTCTGGTTATATTTATCatcatctctctgtctgtggcAGTGAGACATTTTTTGCATACAGAGTTGTATGCAAACATTTGGGTGCCCTTGTcaagttatatattttattattttttaccaagTGTGATTAGgtacaaattaacacaaagtTATATCGTGCCTTAAAAGTGGCATgtaaattacatatttacagtCTTTGTtcacttatttatatatatatatatatatatatatatatataatcgtCTTATATCGACTGAAGGTGCCCATTTTTTCATACAGCTAAATATTCCATATAATGTTTTCTCGTAAGCAAAAAAGGGAGACCACTGTTTATATGTGTATGTTAAGTAAGGCAGCTTTTGTCCAAACTAATGGGTAAACTGGGTTGCTAAAAAGCAACCGATGATTAAGGgtgtaataaagtgtatttGGATTTGTGTATGAATGCA

Function

NR:

description
PREDICTED: immunoglobulin-like domain-containing receptor 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007227808.3 True 3645 mRNA 0.45 8 33202309 33212497

Neighbor

gene id symbol gene type direction distance location
LOC103029083 me3,LOC108426042,LOC107748144,LOC107756775,LOC107695468,LOC107595810,LOC101480202,LOC102214044 coding downstream 1622 33191783 ~ 33200687 (-)
dcaf6 dcaf6 coding downstream 32658 33137807 ~ 33169651 (-)
slc35a5 slc35a5 coding downstream 94570 33100934 ~ 33107739 (-)
c19hxorf36 cunhxorf36 coding downstream 323642 32872118 ~ 32878667 (-)
fundc1 fundc1,LOC107673665,LOC107565940,LOC107695457,LOC107748200 coding downstream 398415 32799174 ~ 32803894 (-)
LOC103027491 NA coding upstream 26468 33238965 ~ 33245652 (-)
LOC103024754 NA coding upstream 70457 33282954 ~ 33296107 (-)
LOC103022452 NA coding upstream 313917 33526414 ~ 33532608 (-)
klf5 klf5,LOC108426007,LOC105912602,LOC105007142,LOC103357491,LOC104962226 coding upstream 323527 33536024 ~ 33543858 (-)
gpr18 gpr18,LOC107748622,LOC107681324,LOC107600424,LOC107570094 coding upstream 607667 33820164 ~ 33823054 (-)
G171555 NA non-coding downstream 22460 33179383 ~ 33179849 (-)
G171554 NA non-coding downstream 23984 33177919 ~ 33178325 (-)
G171546 f5,LOC107565953,LOC107748149,LOC107673674 non-coding downstream 73687 33127486 ~ 33128622 (-)
G171525 NA non-coding downstream 102378 33023079 ~ 33099931 (-)
G171523 NA non-coding downstream 237072 32960604 ~ 32965237 (-)
G171569 NA non-coding upstream 90670 33303167 ~ 33305460 (-)
G171573 commd6 non-coding upstream 108188 33320685 ~ 33322970 (-)
G171580 tbc1d4 non-coding upstream 152307 33364804 ~ 33369961 (-)
G171587 tbc1d4 non-coding upstream 166860 33379357 ~ 33381869 (-)
G171595 NA non-coding upstream 222648 33435145 ~ 33435532 (-)
G171553 NA other downstream 26025 33174053 ~ 33176284 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other downstream 426291 32758507 ~ 32776018 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other downstream 1298141 31895832 ~ 31904168 (-)
G170854 NA other downstream 4514630 28686050 ~ 28687679 (-)
LOC111194963 NA other downstream 5299410 27900191 ~ 27902899 (-)
LOC103028031 LOC108426040 other upstream 1825 33214322 ~ 33235878 (-)
LOC103024438 LOC108426008 other upstream 95496 33307993 ~ 33318351 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other upstream 1042880 34255377 ~ 34273789 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other upstream 1720515 34933012 ~ 34959753 (-)
G172060 NA other upstream 2009218 35221715 ~ 35222225 (-)

Expression


Co-expression Network