fundc1 (fundc1,LOC107673665,LOC107565940,LOC107695457,LOC107748200)


Basic Information

Item Value
gene id fundc1
gene name fundc1,LOC107673665,LOC107565940,LOC107695457,LOC107748200
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 32799174 ~ 32803894 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007227821.3
GGCGAATGTGCGATCAATGAAGGTGGAGTATTTGTGTAAGAGTGCAGGGAGGTGCGCATGCGCGACACTGCTGTAGCCTCGTAAAATGGCGGATCGTGGAGAAGAGGCAGAGAGTGAGGATGAATTGTACGAGGTGGTGGATATCACAGACTATGCCAGACGGCATCAGTGGTGGAGTCGAGTCTTTGGGAGCAATACAGGACCTATTGCTGAAAAGTACTCTGTGGCGACGCAGCTCATGATGGGGGGCATGACAGGCTGGTGTGCTGGATATCTCTTTCAGAAGGTTGGGAAAATTGCTGCAACTGCAGTTGGTGGAGGATTCTTATTGTTGCAAattgcCAATCACAGCGGCTACGTGGAGGTCGACTGgaagaaagtaaagaaagatGTTAATAAAGCGAAAAAGCACCTGAAGAAAAAGGCCAACAAAGCTGCTCCTGAGTTAAATTCCTTTATCGACGAGTCCACAGAATTTGTCAAGagaaacattgttgtttcaagTGGATTCGTTGGAGGATTTCTGCTGGGTCTGGCATCCTAAATTCTGGATGAGTCTGCTGCATAAATGAACTCTGCCAATCCTGAGGCATTGTCCTCAGTGTTTATGTTCAATTGCTGTATCACAGGGGcacaacactaaaaaaaaaaaaaaaaaaacacagatggtTTTAAGACAAAGTTTGCACTAGAGGGTTGTGGCAGTGCCTGGAcctgggtctctctctctctctgtctgtacaATGAGGaaagaaatttaaatatatcatgAAGTATATTATTAACACTACTTTAAGTTCATTACTGGAATGCTacaacatgtttattttatatatattggtCAGTGTTGTTGTTAGCTGGAAAACTTAATGCCTGTACTTTATTAGTTACGTGAgcatatgttaaaaaaatagtccTGTATTAAGCTGTGTATAGTAATTAATTTTTCAGTTATAATTTGCCTTTTTCACAgtgcttaattttattttatttgtatgccTTTTTCATTTGTTGTTACACAGATGGTTTCTTGTAGTTTTAATTATGtttgatgtgttttatttatgtactgtactgtgccAACTACTTTACTGGACACTTGAAACTTATATATGTTAACATAAAAGATGATCTCCTAATAAAAGAGGCATTATTTATCCA

Function

symbol description
fundc1 Predicted to be involved in autophagy of mitochondrion and response to hypoxia. Predicted to act upstream of or within autophagy. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial outer membrane. Is expressed in several structures, including blastomere; liver; nervous system; neural tube; and pleuroperitoneal region. Orthologous to human FUNDC1 (FUN14 domain containing 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0000422 autophagy of mitochondrion biological_process
GO:0001666 response to hypoxia biological_process
GO:0031307 integral component of mitochondrial outer membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007227821.3 True 1161 mRNA 0.39 5 32799174 32803894

Neighbor

gene id symbol gene type direction distance location
efhc2 efhc2 coding downstream 1048 32782380 ~ 32798126 (-)
maob maob,mao,LOC107565948,LOC107673703,LOC107748155,LOC107695498,LOC107595828,LOC108266753 coding downstream 53603 32699967 ~ 32745571 (-)
cask caska coding downstream 161997 32408907 ~ 32637177 (-)
rpl8 rpl8,LOC107595836,LOC107748161 coding downstream 426793 32368375 ~ 32372381 (-)
med14 med14,LOC107756768 coding downstream 476228 32304450 ~ 32322946 (-)
c19hxorf36 cunhxorf36 coding upstream 68224 32872118 ~ 32878667 (-)
slc35a5 slc35a5 coding upstream 297040 33100934 ~ 33107739 (-)
dcaf6 dcaf6 coding upstream 333913 33137807 ~ 33169651 (-)
LOC103029083 me3,LOC108426042,LOC107748144,LOC107756775,LOC107695468,LOC107595810,LOC101480202,LOC102214044 coding upstream 387889 33191783 ~ 33200687 (-)
LOC103028763 LOC108426041 coding upstream 398415 33202309 ~ 33212497 (-)
G171461 NA non-coding downstream 96318 32696106 ~ 32702856 (-)
LOC111194865 NA non-coding downstream 115526 32682328 ~ 32683648 (-)
G171463 NA non-coding downstream 120198 32678654 ~ 32678976 (-)
G171280 NA non-coding downstream 554741 32240638 ~ 32244433 (-)
G171237 NA non-coding downstream 819882 31979091 ~ 31979292 (-)
G171479 NA non-coding upstream 1743 32805637 ~ 32811201 (-)
LOC111194944 NA non-coding upstream 110024 32913918 ~ 32932234 (-)
G171523 NA non-coding upstream 156710 32960604 ~ 32965237 (-)
G171525 NA non-coding upstream 219185 33023079 ~ 33099931 (-)
G171546 f5,LOC107565953,LOC107748149,LOC107673674 non-coding upstream 323592 33127486 ~ 33128622 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other downstream 23156 32758507 ~ 32776018 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other downstream 895006 31895832 ~ 31904168 (-)
G170854 NA other downstream 4111495 28686050 ~ 28687679 (-)
LOC111194963 NA other downstream 4896275 27900191 ~ 27902899 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 6546908 26226457 ~ 26252266 (-)
G171553 NA other upstream 370159 33174053 ~ 33176284 (-)
LOC103028031 LOC108426040 other upstream 410428 33214322 ~ 33235878 (-)
LOC103024438 LOC108426008 other upstream 504099 33307993 ~ 33318351 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other upstream 1451483 34255377 ~ 34273789 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other upstream 2129118 34933012 ~ 34959753 (-)

Expression


Co-expression Network