G171280


Basic Information

Item Value
gene id G171280
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 32240638 ~ 32244433 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU231843
TCCTCTGCTATTGCTGCCACCCCCAGACGGGAGCGTGGCTGACGGAGGGCTGCAAGGAGCACTGAGCGATGCAGAAGTCCTCTCTGACATATTACTCTTTGAAgaaatgttgttgttttctgtAAAAACGAGGGAGTCCCTTCCATTGCAGTCCTCTTGTCCAAAATCCAACGTATCTCCATCCTTGATCTTTCTGAGGTAGTCTGAAAGTATCACCTGAGTGCTGGGCTCACTCAACCAGTTGAGGAAGAGCTCATCCACCTTCATCTTCAGGACTGGTTGCAAAACTTGAGGAGAAGGCATTTTGGATGTTTCTATTTTTCCTCCACAATACAGTTACGTAAAACGCCCTGCACAACAAGTTCTCCGCACAAcccgtctctctctcatttctccgGCCGGGTTTACTTTGAATCAAACTCTCGTCTCCACAGGTAACCGGGAAACCGAGTCTCGCGAGACTGCAGATCTGAACTCCTCACTGCTGCTGAATCAGAGCGGAGTTTATCTCAGGGGGCTTTCTCTTCTCACTGCAGCTATAAACTACACCTGATGCTGCAGTTAAAGGATATGCTGGAGCTCGTTCTTTGAGCTGGCTAAAAG

Function

GO: NA

KEGG:

id description
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU231843 True 603 lncRNA 0.49 3 32240638 32244433

Neighbor

gene id symbol gene type direction distance location
LOC103042484 shox,LOC107597497,LOC107748138,LOC107673655,LOC107695485 coding downstream 88839 32139573 ~ 32151799 (-)
LOC103045951 tfdp1,tfdp1a,LOC108426071,LOC108266453,LOC107595816,LOC107748134,LOC107597491,LOC107756763,LOC107673714 coding downstream 298425 31932391 ~ 31942213 (-)
LOC103043487 jam2b,LOC108426074,LOC107577316 coding downstream 328235 31904269 ~ 31912403 (-)
LOC103022864 si:dkey-67c22.2,LOC107569142,LOC107748125,LOC107673696,LOC107656780,LOC108426078,LOC107756753 coding downstream 986231 31244773 ~ 31254407 (-)
rcan1 rcan1,rcan1a,LOC108266951,LOC107748124,LOC107656781,LOC107597484,LOC107673717,LOC107756752 coding downstream 997122 31232151 ~ 31243516 (-)
LOC103041458 LOC108426064,LOC108266307 coding upstream 25106 32269539 ~ 32297518 (-)
LOC103041148 LOC108426017 coding upstream 54934 32299367 ~ 32303297 (-)
med14 med14,LOC107756768 coding upstream 60017 32304450 ~ 32322946 (-)
rpl8 rpl8,LOC107595836,LOC107748161 coding upstream 123942 32368375 ~ 32372381 (-)
cask caska coding upstream 164474 32408907 ~ 32637177 (-)
G171237 NA non-coding downstream 261346 31979091 ~ 31979292 (-)
G171236 upf3a,LOC107673688,LOC107748176 non-coding downstream 272916 31966206 ~ 31967722 (-)
G171232 NA non-coding downstream 279064 31961281 ~ 31961574 (-)
G171231 cdc16,LOC107595809,LOC107756764,LOC107695467,LOC107748135,LOC107597489 non-coding downstream 280445 31957167 ~ 31960193 (-)
G171230 cdc16,LOC107673708,LOC107597489,LOC107748135,LOC107595809,LOC107695467 non-coding downstream 283937 31955818 ~ 31956701 (-)
G171463 NA non-coding upstream 434221 32678654 ~ 32678976 (-)
LOC111194865 NA non-coding upstream 437895 32682328 ~ 32683648 (-)
G171461 NA non-coding upstream 451673 32696106 ~ 32702856 (-)
G171479 NA non-coding upstream 561204 32805637 ~ 32811201 (-)
LOC111194944 NA non-coding upstream 669485 32913918 ~ 32932234 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other downstream 336470 31895832 ~ 31904168 (-)
G170854 NA other downstream 3552959 28686050 ~ 28687679 (-)
LOC111194963 NA other downstream 4337739 27900191 ~ 27902899 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 5988372 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 6335022 25798510 ~ 25905616 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 514074 32758507 ~ 32776018 (-)
G171553 NA other upstream 929620 33174053 ~ 33176284 (-)
LOC103028031 LOC108426040 other upstream 969889 33214322 ~ 33235878 (-)
LOC103024438 LOC108426008 other upstream 1063560 33307993 ~ 33318351 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other upstream 2010944 34255377 ~ 34273789 (-)

Expression


Co-expression Network