rpl8 (rpl8,LOC107595836,LOC107748161)


Basic Information

Item Value
gene id rpl8
gene name rpl8,LOC107595836,LOC107748161
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 32368375 ~ 32372381 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007227850.3
actcctcctcctcctctttctttttctcttcgtCTCCGGAAgaaattctctctctccccgctGCGCTTCCTTTTCCCCTCAGCGGAGTTTAGAACCCGAAAATGGGACGTGTGATCAGGGCTCAGAGGAAAGGTGCGGGCTCCGTCTTCAAAGCCCACGTCAAGCTCAGGAAAGGTGCCGCTAAGCTCAGACACATTGACTTTGCTGAGCGCCATGGCTACATTAAGGGAATTGTGAAGgaCATCATTCACGACCCTGGCCGTGGAGCCCCCTTGGCCAAGGTGGTGTTCCGTGACCCCTACAGGTTCAAGAAAAGGACTGAATTGTTCATTGCAGCTGAGGGCATCCACACTGGACAGTTCATCTTCTGCGGCAAGAGAGCCCAGCTGAACATTGGCAATGTAATGCCTGTCGGCAACATGCCTGAGGGTACCATTGTGTGCTGTCTGGAAGAGAAGCCTGGAGACAGGGGTAAGCTGGCCCGCGCATCCGGGAACTACGCCACGGTCATCTCCCACAACCCAGAGACCAAGAAATCCAGAGTCAAGCTCCCCTCTGGATCCAAGAAAGTCGTCTCCTCAGCTAACAGAGCTGTTGTCGGTATTGTTGCTGGTGGTGGTCGTATCGACAAACCCATCCTGAAGGCAGGACGTGCCTACCACAAGTACAAGGTCAAGAGAAACTGCTGGCCTCGTGTCCGTGGTGTGGCTATGAATCCTGTTGAGCATCCCTTCGGTGGTGGTAACCATCAGCACATTGGCAAACCCTCAACTATCAGGAGGGATGCGCCCGCTGGACGCAAGGTCGGTCTCATCGCTGCTCGTCGTACTGGCAGACTGCGTGGAACAAAGACCGTCCAGGACAAAGAAAACTAAAGTGTCTCTTCATAATAAAATATCCATCAAAAGAC

Function

symbol description
rpl8 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL8 (ribosomal protein L8).

NR:

description
PREDICTED: 60S ribosomal protein L8-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015934 large ribosomal subunit cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02938 RP-L8e, RPL8; large subunit ribosomal protein L8e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007227850.3 True 910 mRNA 0.53 6 32368375 32372381

Neighbor

gene id symbol gene type direction distance location
med14 med14,LOC107756768 coding downstream 45429 32304450 ~ 32322946 (-)
LOC103041148 LOC108426017 coding downstream 65078 32299367 ~ 32303297 (-)
LOC103041458 LOC108426064,LOC108266307 coding downstream 70857 32269539 ~ 32297518 (-)
LOC103042484 shox,LOC107597497,LOC107748138,LOC107673655,LOC107695485 coding downstream 216576 32139573 ~ 32151799 (-)
LOC103045951 tfdp1,tfdp1a,LOC108426071,LOC108266453,LOC107595816,LOC107748134,LOC107597491,LOC107756763,LOC107673714 coding downstream 426162 31932391 ~ 31942213 (-)
cask caska coding upstream 36526 32408907 ~ 32637177 (-)
maob maob,mao,LOC107565948,LOC107673703,LOC107748155,LOC107695498,LOC107595828,LOC108266753 coding upstream 327586 32699967 ~ 32745571 (-)
efhc2 efhc2 coding upstream 409999 32782380 ~ 32798126 (-)
fundc1 fundc1,LOC107673665,LOC107565940,LOC107695457,LOC107748200 coding upstream 426793 32799174 ~ 32803894 (-)
c19hxorf36 cunhxorf36 coding upstream 499737 32872118 ~ 32878667 (-)
G171280 NA non-coding downstream 123942 32240638 ~ 32244433 (-)
G171237 NA non-coding downstream 389083 31979091 ~ 31979292 (-)
G171236 upf3a,LOC107673688,LOC107748176 non-coding downstream 400653 31966206 ~ 31967722 (-)
G171232 NA non-coding downstream 406801 31961281 ~ 31961574 (-)
G171231 cdc16,LOC107595809,LOC107756764,LOC107695467,LOC107748135,LOC107597489 non-coding downstream 408182 31957167 ~ 31960193 (-)
G171463 NA non-coding upstream 306273 32678654 ~ 32678976 (-)
LOC111194865 NA non-coding upstream 309947 32682328 ~ 32683648 (-)
G171461 NA non-coding upstream 323725 32696106 ~ 32702856 (-)
G171479 NA non-coding upstream 433256 32805637 ~ 32811201 (-)
LOC111194944 NA non-coding upstream 541537 32913918 ~ 32932234 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other downstream 464207 31895832 ~ 31904168 (-)
G170854 NA other downstream 3680696 28686050 ~ 28687679 (-)
LOC111194963 NA other downstream 4465476 27900191 ~ 27902899 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 6116109 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 6462759 25798510 ~ 25905616 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 386126 32758507 ~ 32776018 (-)
G171553 NA other upstream 801672 33174053 ~ 33176284 (-)
LOC103028031 LOC108426040 other upstream 841941 33214322 ~ 33235878 (-)
LOC103024438 LOC108426008 other upstream 935612 33307993 ~ 33318351 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other upstream 1882996 34255377 ~ 34273789 (-)

Expression


Co-expression Network