G171546 (f5,LOC107565953,LOC107748149,LOC107673674)


Basic Information

Item Value
gene id G171546
gene name f5,LOC107565953,LOC107748149,LOC107673674
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33127486 ~ 33128622 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU232213
ttacattaaattacaatcTTTAATACAGAATCATCTGAGGcaacaataatacaaataaagaacatcTCTAAAAATTACAATCAAATTACAATGTCTATCATTCAAAATCACATCCTAGCAGCTCTATCCTCATAGTGATGGAGTTCTGCCATCTTTTAGGAATAATCCTGATAAATCTGGAGAATATTGGAGGGTAGATATAATTTTTTACGTGTCCATTGTTATCTGTGTTTCCTGTGAATATCTTCTGCTCATAGTCCTCATCATCCGTATACTTGATCCATCTATTGCCATCCTCACTGTACTCCAGCACATACGCCGTCACAAACATCTCTGTGCCTAGAGACTTCGCTCCCTGGGTCACAATTCCTGTGATCTTCTTGACCGCCTTCAGTTCAATCTGGAGCCATGGCTGCATGTCAT

Function

symbol description
f5 Predicted to enable copper ion binding activity. Acts upstream of or within hemostasis and response to bacterium. Is expressed in liver. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); end stage renal disease; factor V deficiency; liver disease (multiple); and non-arteritic anterior ischemic optic neuropathy. Orthologous to human F5 (coagulation factor V).

NR:

description
PREDICTED: venom prothrombin activator omicarin-C non-catalytic subunit-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232213 True 423 lncRNA 0.38 2 33127486 33128622

Neighbor

gene id symbol gene type direction distance location
slc35a5 slc35a5 coding downstream 19747 33100934 ~ 33107739 (-)
c19hxorf36 cunhxorf36 coding downstream 248819 32872118 ~ 32878667 (-)
fundc1 fundc1,LOC107673665,LOC107565940,LOC107695457,LOC107748200 coding downstream 323592 32799174 ~ 32803894 (-)
efhc2 efhc2 coding downstream 329360 32782380 ~ 32798126 (-)
maob maob,mao,LOC107565948,LOC107673703,LOC107748155,LOC107695498,LOC107595828,LOC108266753 coding downstream 381915 32699967 ~ 32745571 (-)
dcaf6 dcaf6 coding upstream 9185 33137807 ~ 33169651 (-)
LOC103029083 me3,LOC108426042,LOC107748144,LOC107756775,LOC107695468,LOC107595810,LOC101480202,LOC102214044 coding upstream 63161 33191783 ~ 33200687 (-)
LOC103028763 LOC108426041 coding upstream 73687 33202309 ~ 33212497 (-)
LOC103027491 NA coding upstream 110343 33238965 ~ 33245652 (-)
LOC103024754 NA coding upstream 154332 33282954 ~ 33296107 (-)
G171525 NA non-coding downstream 27555 33023079 ~ 33099931 (-)
G171523 NA non-coding downstream 162249 32960604 ~ 32965237 (-)
LOC111194944 NA non-coding downstream 195252 32913918 ~ 32932234 (-)
G171479 NA non-coding downstream 316285 32805637 ~ 32811201 (-)
G171461 NA non-coding downstream 424630 32696106 ~ 32702856 (-)
G171554 NA non-coding upstream 49297 33177919 ~ 33178325 (-)
G171555 NA non-coding upstream 50761 33179383 ~ 33179849 (-)
G171569 NA non-coding upstream 174545 33303167 ~ 33305460 (-)
G171573 commd6 non-coding upstream 192063 33320685 ~ 33322970 (-)
G171580 tbc1d4 non-coding upstream 236182 33364804 ~ 33369961 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other downstream 351468 32758507 ~ 32776018 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other downstream 1223318 31895832 ~ 31904168 (-)
G170854 NA other downstream 4439807 28686050 ~ 28687679 (-)
LOC111194963 NA other downstream 5224587 27900191 ~ 27902899 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 6875220 26226457 ~ 26252266 (-)
G171553 NA other upstream 45431 33174053 ~ 33176284 (-)
LOC103028031 LOC108426040 other upstream 85700 33214322 ~ 33235878 (-)
LOC103024438 LOC108426008 other upstream 179371 33307993 ~ 33318351 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other upstream 1126755 34255377 ~ 34273789 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other upstream 1804390 34933012 ~ 34959753 (-)

Expression


Co-expression Network