RNA id: TU232262


Basic Information

Item Value
RNA id TU232262
length 2478
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G171587
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33379357 ~ 33381869 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTACACTGCACTATAtaacaaatgaaataatgagtttttacggttttttacatccaattttctattttcgcatttagcctcaaacgaaaaatctgaaaatttacttaataaacattacactgactGTTTAGATCAAGTTTTAACTGGTTAACTCATTCCTACTCTCTCATACTACTAAATACACACTTGAATCACCAGTATGGAACATCACTCTTTATGGTTCTCTGTACATTAAGCTGCTTTAATAACAGCACAACGTGACCCATCatgtttaaccatgttttactCAATCATCTGCATGTTAATGGTTCTCACCTGGTCACACAGCTTGACGGGAATTACACTTATGGAAAACtgagaaattacaaaaaaaaaaaaaaaacatctgaacaACATTACAGTACTACAGGAGAAACCTGTATATTGCTTCAGACAGCCATCGtacaaaaagataaagagataaaacaaaaaacagccaCCTTAATCAAGACAGAAGCTGAAGTGCCAGCATACAAATCAACTAATCCCACTCCACACCTACAAAATGTTAAGCAATATTCATTTCTCCTAATATTTCATgacattttaatacaaaaatgtcGTACTTATCACACCCTTTAGGGCAGAGGGGATGGGGAGCTTTACACAGATTCACTCAATCCATGTTAAATAGCTGCACTTCACCGACATGGCTGCAGCTGGAGGGTCCTTTTCTCAGGCAAGCTGCACATAACTGAAGTACTTTTTATCAACAGGGATAAAAacaacaagtttttttttgcaaattaagtGCGCGGCATTTTGCATAGCTTCACCAGCTAGCCTGCGTTCATTAACAATGCGTGAAATAATCTGCATAAATCACTTATAAGGCTTCGTTGACGGATAAGTTCTGACGCAAGaggctttttaattttttggggttttttttttctttcagcaaATAAGACACATAAGAGGGGAGTTACGAGAAGTTATCAGTCATGCTGCAGTCAGAGCCCTGCACGGACGCACTGAGACACACGGCGCTAAGCATAATTTAACAATAATATTTGTGCAAATGTCAAGCACAATTTTGGAGTTTGGAGTTACACACAGCACGAAAGACAAATTTCATTTGGGGTCAAGCgagcttttgttttgtttctgcatttctgcattTTGTTTCTGTAGTATTTGTATACGGTGTATGAACTACGCTCATAATCGAAATCAGCTTCGCAAACAGACgtttctcacacacatacacacagattagagacagagagagagagagagaaagagagagagcagtatgCAAAACTAACGCAACAGCAGACttgcttgctttttttttttttttttcgtctctTTTGACGTGATGAATGATTCGCCTTGAAGTACATTCAGTAACAGGTGAAGTGCCAGATAGGCGTAGGAGTTCTGGAGAGCAGGTTAAATTTGGATGACACTGCTAAGTCACAGCGGAAACTCAGAGACGGTTTCATTTCCTGCTTGAACTTTGGGTTAAGCTCTTTCAGCACAGTGTCGATTTGACGGCCTAAATATTTTGGTTTCTCGGGATGATTGAGTCACACTCCCTTTTGTTGCATTTCATCAGGAGAAGCTCTCCAGCGAGAGCGAAAAgacgaaaagaaaaaaaatatatataaaaatgaagaaaagcgCTCCCATAACATACGTCGACATCAGGGCAGCGCTCCTCAGTACGCCCACAGCCGCGAGTCTCACTGATCTTTGGAAAGAAAATACATTCGTATCGTTTTCAAGTATTTTCAAATTCACGAATCCACACAGGCTGTAGCGCTGCAACGCTTCCTTTCTGTTCTTATCACTTAGGGAAGCCACCTTCTTCTGCACCTGAAGTCCTGAAGTGAACAAATCGGATCAGAGCAAATGTGACACAAGCAGACGCAGACTTCCTATTCCCATTTCCATTTCCCACTCGCTATTTCCTTTGCAGCAGTCTTTCCTTTCCATGCTTTATCGGCATGGAAGTAAAATtgttttttgcttcttttttttttttcttcagaaggCTACACGGCTAGGGGCTAGGCTACCCTCCGATAGCTCCAACTCTAGCCCTGATCATCACAGTGGATACCCAAGCTTCCACAGTATGTGTGAACTCTCATCATCAGCCCATAAATGCTGCGAGCTTTGAGAGAACCATCAGAACACACATGATGGTCGTCTCAAACGTCTCAAATGAATCGACTCTTTACACTGTGGATTCGTTTGCCGAATCAAGGCTTCTTGCTGGCTGCTTTGGTTTTGCCGTTGCTGCCGGACTTCAGCTGGGTCATCTCCACTTCTGCAGCCGAGTCCTGCGGGAGGCTGCTGCGCATGCGCTCGATGGTCTTCTGGTAGGACGTCTTCTCCTGCTCCAGCGAGCGAATCAGGTGCTTCATCTGACTCTCGCGAGCCAGAAAGCTCTCCACGCTGGTCTCCAAACTCTGGATCTTCACCCGCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232254 lncRNA downstream 9396 33364804 ~ 33369961 (-) True G171580
TU232243 lncRNA downstream 56387 33320685 ~ 33322970 (-) True G171573
TU232241 lncRNA downstream 68395 33307993 ~ 33310962 (-) False LOC103024438
TU232239 lncRNA downstream 73897 33303167 ~ 33305460 (-) True G171569
TU232224 lncRNA downstream 199508 33179383 ~ 33179849 (-) True G171555
TU232270 lncRNA upstream 53276 33435145 ~ 33435532 (-) True G171595
TU232310 lncRNA upstream 140332 33522201 ~ 33523894 (-) True G171627
XR_002651396.1 lncRNA upstream 217005 33598874 ~ 33616676 (-) False LOC103021721
XR_002651397.1 lncRNA upstream 224192 33606061 ~ 33618542 (-) True LOC103021721
XR_001518504.2 lncRNA upstream 224192 33606061 ~ 33616676 (-) False LOC103021721
XM_007227790.3 mRNA downstream 61006 33308869 ~ 33318351 (-) True LOC103024438
XM_022680616.1 mRNA downstream 83250 33282954 ~ 33296107 (-) True LOC103024754
XM_007227804.3 mRNA downstream 133705 33238965 ~ 33245652 (-) True LOC103027491
XM_007227805.3 mRNA downstream 143481 33214322 ~ 33235876 (-) False LOC103028031
XM_007227783.3 mRNA upstream 144545 33526414 ~ 33532608 (-) True LOC103022452
XM_007227781.3 mRNA upstream 154155 33536024 ~ 33543858 (-) True klf5
XM_007227782.3 mRNA upstream 154155 33536024 ~ 33543854 (-) False klf5
XM_007227780.2 mRNA upstream 438295 33820164 ~ 33823054 (-) True gpr18
XM_015603986.2 mRNA upstream 456833 33838702 ~ 33841615 (-) True gpr183
XR_002651393.1 other downstream 143479 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 203073 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 607225 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 1475830 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4691678 28686050 ~ 28687679 (-) True G170854
TU232866 other upstream 1555436 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 1839846 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 1988574 35370443 ~ 35371387 (-) False olig2

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU95147 True 207 lncRNA 0.40 1 CI01000013 8496043 ~ 8496249 (-)
striped catfish (Pangasianodon hypophthalmus) TU95147 False 3261 lncRNA 0.39 2 NC_047599.1 10453005 ~ 10456316 (+)
mexican tetra (Astyanax mexicanus) TU95147 True 638 TUCP 0.46 1 NC_035904.1 1268767 ~ 1269404 (+)