RNA id: TU232310


Basic Information

Item Value
RNA id TU232310
length 1528
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G171627
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33522201 ~ 33523894 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCAATCCAgacatgtacagtatgtactaCTGTACAGGAGcataattaatgttaattttaagcatttaaactgatataaaaggacatttatattttaaggaGCATAAATCATGTtgacacctggtcacttcatctAATGTTCATGTAGAATTTGGATTATTCTATTCTGATGAGAATCATAATTTCAGACCCATGCATTtcatcgctgtcctatgaaaaacacttatctccatttttgtcccttacactgtgccaaaatttcttgatgaatggaccaatagaaactcttcaaaatgacctgaaataaacttttttccattgacttccattgaaagttaacaaggttttttctctctcctgtaaagttgctgttttggagataagtgtttttcattggacagcaacgatttACACTTAGTAGTCAAATGCTTTTCTGGTTATCCAAACCGAAATCAGATTGTTGTGTAGGACAGAATATGCAAATTCACTCATTGTGCTGCAattattactggttttactggtgttttggttgtactgggaagAGTTTGGGTTGTTGAATCTGTTGATCTTGGAGAGACGGATGGTTTAACACTGCTATAACATGTGGCTcaaatgcatctcagaccatcttctatagtggctatatatatatatattggttatTCAGACTGAAATCAGATTGCTGTGTTGGGTGGAATATGCAAATTCACTTACTGTGCTGCAGTTagtactggttttactggtgttttggttgtactgggagaaGTTTTTAATTGTTGAAGAGATGGGcgtgtttacactgctataatACATGGTTTAACTGCGTCTCAGACCGTCTCCTAAAGCAGTTCACGTGATTTGgtataattctgattatatattGGGTGATATATTCAGGCTTTAGAATGGTCTCGAGTGGTGTAGTGGTCTCAATGGCTGCCTCTatatcgctggttcgaatcccggtcatgcagctcgccatcagctgccagagccccgagagagcacaattgaccttgctttctctgggtgggtagatggcgctctttcccctcatcactcctaggggactttacatgtgtcggatgagacatgtgctagtctttaaccTCCTTGTGtcgaggcatcactagtgatgggggatatacagctgagtagcagctgaatgggtgggataattgttaaattgggagaaaaacaggagaaaaatataaacaaagtaaaaaatatatataattaaagaaCGGTCTGGATATTTATGTTAATGATAAAGTCACCTGATACTACTTACTGTAATTTACATAACAATGTCATAACAAGGTCATAACAAGGTTGTGTTTAGTGGGCATTAATACAACTAACAATGTAGCTGATTTATTATGTGTTTGGAAATTACTTATGAACCCCAGATCTCCAGTTACTTGATGCACTATTGCAGATGCTAATAAATACAGCTAATAGCACATAGAGGATTAATTAGACCTGCTATTAGAAGTGTTGGGTAATATTGAAATCCATAgattaaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232270 lncRNA downstream 86669 33435145 ~ 33435532 (-) True G171595
TU232262 lncRNA downstream 140332 33379357 ~ 33381869 (-) True G171587
TU232254 lncRNA downstream 152240 33364804 ~ 33369961 (-) True G171580
TU232243 lncRNA downstream 199231 33320685 ~ 33322970 (-) True G171573
TU232241 lncRNA downstream 211239 33307993 ~ 33310962 (-) False LOC103024438
XR_002651396.1 lncRNA upstream 74980 33598874 ~ 33616676 (-) False LOC103021721
XR_002651397.1 lncRNA upstream 82167 33606061 ~ 33618542 (-) True LOC103021721
XR_001518504.2 lncRNA upstream 82167 33606061 ~ 33616676 (-) False LOC103021721
XR_002651395.1 lncRNA upstream 82167 33606061 ~ 33616676 (-) False LOC103021721
TU232342 lncRNA upstream 266589 33790483 ~ 33791587 (-) True G171653
XM_007227790.3 mRNA downstream 203850 33308869 ~ 33318351 (-) True LOC103024438
XM_022680616.1 mRNA downstream 226094 33282954 ~ 33296107 (-) True LOC103024754
XM_007227804.3 mRNA downstream 276549 33238965 ~ 33245652 (-) True LOC103027491
XM_007227805.3 mRNA downstream 286325 33214322 ~ 33235876 (-) False LOC103028031
XM_007227783.3 mRNA upstream 2520 33526414 ~ 33532608 (-) True LOC103022452
XM_007227781.3 mRNA upstream 12130 33536024 ~ 33543858 (-) True klf5
XM_007227782.3 mRNA upstream 12130 33536024 ~ 33543854 (-) False klf5
XM_007227780.2 mRNA upstream 296270 33820164 ~ 33823054 (-) True gpr18
XM_015603986.2 mRNA upstream 314808 33838702 ~ 33841615 (-) True gpr183
XR_002651393.1 other downstream 286323 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 345917 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 750069 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 1618674 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4834522 28686050 ~ 28687679 (-) True G170854
TU232866 other upstream 1413411 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 1697821 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 1846549 35370443 ~ 35371387 (-) False olig2

Expression Profile