RNA id: XR_002651396.1


Basic Information

Item Value
RNA id XR_002651396.1
length 1429
lncRNA type inter_gene
GC content 0.44
exon number 5
gene id LOC103021721
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33598874 ~ 33618542 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agaatgacaggaggagaaagaaagaaaaaaatgagctgaaaagTGCAGCTCTCTCTTTGGATGAGTTGTTGTTGTCACAAGGTCCAAAGGGGGCGGAGCCTCGGCCACTCTCCCAGCTCTGAAGCGCACACGATGCGCAAATGTGATGCCATGCTACACTCACTTGGACAGACTATAGTATAACTCTGAGGGAAGAATAGAAATCCCgagaaaactctctctctctttcacttctcCTGTCCTACTTCCAGGAACAGAatcctcacacactcacccatCTCTCCAGGAAAGTCAGTCAAGGATTGAGATCACCTCCACGTGATTAATCCTGTTCACTGTTTAGTGTATAAACCTCAATTTATTGTTGtctattaaaggagaaatctagATTGTTAGTGAAACATGAGACCTCAGTTCTTCATGACATGGATTCCAAAAGATGTTGGTAAAAATTCCCTTGAGATTCTGCTTCTTGCTGACATGATTGCGTCACGCAATTCCTGCAGATTTTCCAGGAGCACTTATAAACTGCAAATCTTCCATTTTACCAAATCCCAAAGAGGAAGAAAGTGATCACCGCAGCTATGAGCAGGATATGGTTGCTGTTTTCCGTCGATGAGGTGGTGAAATGCAAGTCTAGGTGATGCACATGGATTGCATTTCATGTATGAGCACAGCAAAGCAGCATCAAGGATGATGAGGTTGCATGGCATTGACCCCTTCCTTGCGGAGAAGCAGCACACTGCAAACAGAGCAGAATCCGGTGAAGGGCAGATGTCAGAGTGGCCACTGTCAGCCTGGACTCAGCCTGGCTTCACCAACAAGGGAGTGGGGTAGGGGtactgagacagagagagcccACGGGCCTGTAAATGTCACCCCATCCATGCAGAGACAGCACCACCACGGACCCTGGCTGTAGTTCTATAAACACCTCTCCATTCAGAGTGACCACCAGGGAATTCACCATTTCACCATTCAGTTACAGACTCAACTCTTCAGGGAAGGTTTTCCACCAGAGGAACTCTGGATGATTCTGGATTAGTTCTGGATCACAAGCAACACTCAACACCGACCCCAAGGGTATTCGATAGTGTTCTTTCACTCCAGACAATTCCTCCTCTTtggacctgttttttttatttaatttttttaagagctATTGAGGCAAGATTAATAATATTCAATATTATTTCGCACAAACAGCCTGCACATCTCTGCTAGCAATAAAATCATGTATGCACCAACTGAAGCAGCACGAGTGCAAATGTTACAACTTGCCCCATAGGCAGGGTTAATTGTTGCTGGCTGAGGGGCTGGTTGTGACAGTCACTAAATATGTAACGACTCAATATGTAACAAACTTTAATTCAAAGAAAACGAGTGTTGTTAAGACTAGATAACTGTTATAAATACAGTtcaatgtatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232310 lncRNA downstream 74980 33522201 ~ 33523894 (-) True G171627
TU232270 lncRNA downstream 163342 33435145 ~ 33435532 (-) True G171595
TU232262 lncRNA downstream 217005 33379357 ~ 33381869 (-) True G171587
TU232254 lncRNA downstream 228913 33364804 ~ 33369961 (-) True G171580
TU232243 lncRNA downstream 275904 33320685 ~ 33322970 (-) True G171573
TU232342 lncRNA upstream 173807 33790483 ~ 33791587 (-) True G171653
TU232350 lncRNA upstream 202493 33819169 ~ 33819443 (-) True G171656
TU232353 lncRNA upstream 217150 33833826 ~ 33834086 (-) True G171659
XR_002651398.1 lncRNA upstream 284870 33901546 ~ 33906036 (-) True LOC111194945
TU232412 lncRNA upstream 385991 34002667 ~ 34004179 (-) True G171716
XM_007227781.3 mRNA downstream 55016 33536024 ~ 33543858 (-) True klf5
XM_007227782.3 mRNA downstream 55020 33536024 ~ 33543854 (-) False klf5
XM_007227783.3 mRNA downstream 66266 33526414 ~ 33532608 (-) True LOC103022452
XM_007227790.3 mRNA downstream 280523 33308869 ~ 33318351 (-) True LOC103024438
XM_022680616.1 mRNA downstream 302767 33282954 ~ 33296107 (-) True LOC103024754
XM_007227780.2 mRNA upstream 203488 33820164 ~ 33823054 (-) True gpr18
XM_015603986.2 mRNA upstream 222026 33838702 ~ 33841615 (-) True gpr183
XM_007227778.3 mRNA upstream 254312 33870988 ~ 33875305 (-) True LOC103047371
XM_007227775.3 mRNA upstream 405293 34021969 ~ 34026838 (-) True zic5
XM_022680006.1 mRNA upstream 638701 34255377 ~ 34273789 (-) False tmtc4
XR_002651393.1 other downstream 362996 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 422590 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 826742 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 1695347 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4911195 28686050 ~ 28687679 (-) True G170854
TU232866 other upstream 1320629 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 1605039 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 1753767 35370443 ~ 35371387 (-) False olig2

Expression Profile