RNA id: TU232412


Basic Information

Item Value
RNA id TU232412
length 1513
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G171716
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 34002667 ~ 34004872 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acagAATAGATTTTAAGGCTGGAaacaaagtattaaacaaacacacGAATGAACACAAATCAAACACCATCTGCCCATCTGAAGTTGGAAAAAAAAGGGACCATTTCTGATGGACCTTCTCATGGCTTCATTTTTGACAGACAACAGCAGGCTTAGCAAACAGTGCAGTGCGAGGTTTCTCTGAGCTTTTTTACAACAGCAGCGTCAGATAAACCTCTCCACCTGGGGTTCCATCACTACACATATTGCATTTCTGCTCTAAGCCTATTGGCCCATTGGGCTTAAAGCCCAGTGTACTTACTGTCTGAGCTAGTGACTTATGCAGACACTGTGTCTGATTGTGGGAAATTCGGCAGCGGCCAACAAGACACCGGGCCTTCGCCATCGCCGTCTCCAAGACGTGACGGGAGGGTGGAAAATGAGATCACCAGATGAGATGAccaaaacaaatagaaagaccattagaaaattaaaaataaatgagaatgAAAGGCTAAGAGAAGGGTGGGGTGTGTTTTGGGGTGGGGAGGGGGTTAACATGGGCCTGGTGCCAGGCAGGCAGCTTACTGTCGGCCCTTTGGGCTGGTCACAGCAGTGTCCTCCATCTTTTTTGTCTGCGTCTCAGGGCTGGCACCGAACGCCGACCTGAAGTGCTCGCCGCAGACACGATTGATCACGCCACATCCAGCCGAACGCTACGACGAGGCCTTCATTACCATAGTGACCAACTGAACTATTAACCATCCAACCCCTCCACCCTGCTCTCATACCTCCCCCACCACCCTCCACCACTTCTGCCCTTCTTGCCAAGGCCTCATCAACAGTGGGAGACAAAAGACTGGCAGACGCGAGAAAGAACAGAGTGTTCTGCAGGACGCAttcatgaggaaaaaaaaaggcacaagCGCAAGTGTCAAAATGACAGTCACTCATTCAATATGACATCCTGGAGTTTTGTTTAAAAAGGAGCTTTCTTAACAAGTAGTGTTGCTGGAGGTTTGACAGCACTGCTGAAGAGAACAATGGCGGCGTGAACTTGTGCTTCTCGGGCATGTTATGGGTGAAAAGCAGATGAGATTCATACACAAGCATACAGGATCATACAGGAGTCTACCAGCTATGAGACTGTGGCAACAAAGCAAagcagaaaacagagagaaacggCAGATATTTACTTACTGCAAAACGGACAAACACTGGCCCCTTgcggtgtgtaagtgtgtatatgtgtgtattgttGCCACACAGGTCAGCTTAGAGCTGATGCCTGCTTCAAAAACGTATTCACCCCCCCTCGCACACTTCACCAGCTCAGAGTGCCCTCTTAAACAAAGGCGTGCGGTTCGGAGTGGGCTGCCGGCCCAAACTCTCCTCTCACTGTTGGTTTAAGGACATTCATGGCGGCTCTTTGGCAAATGATGTTTTGATGTGCCAGGCTCCGGACAAGCGTGGAAGAGCCTTGGGGCTGAATGGAGAAACAACTGTTTGTTTGCCCTTTTGCCAGCCAGGCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651398.1 lncRNA downstream 96631 33901546 ~ 33906036 (-) True LOC111194945
TU232353 lncRNA downstream 168581 33833826 ~ 33834086 (-) True G171659
TU232350 lncRNA downstream 183224 33819169 ~ 33819443 (-) True G171656
TU232342 lncRNA downstream 211080 33790483 ~ 33791587 (-) True G171653
XR_001518504.2 lncRNA downstream 385991 33606061 ~ 33616676 (-) False LOC103021721
TU232414 lncRNA upstream 185 34004364 ~ 34004872 (-) False G171716
TU232433 lncRNA upstream 58973 34063152 ~ 34063495 (-) True G171732
TU232470 lncRNA upstream 163208 34167387 ~ 34167646 (-) True G171768
TU232732 lncRNA upstream 251227 34255406 ~ 34257957 (-) False tmtc4
TU232733 lncRNA upstream 251227 34255406 ~ 34259747 (-) True tmtc4
XM_007227778.3 mRNA downstream 127362 33870988 ~ 33875305 (-) True LOC103047371
XM_015603986.2 mRNA downstream 161052 33838702 ~ 33841615 (-) True gpr183
XM_007227780.2 mRNA downstream 179613 33820164 ~ 33823054 (-) True gpr18
XM_007227781.3 mRNA downstream 458809 33536024 ~ 33543858 (-) True klf5
XM_007227775.3 mRNA upstream 17790 34021969 ~ 34026838 (-) True zic5
XM_022680006.1 mRNA upstream 251198 34255377 ~ 34273789 (-) False tmtc4
XM_022680007.1 mRNA upstream 318994 34323173 ~ 34445239 (-) True nalcn
XM_022680632.1 mRNA upstream 546247 34550426 ~ 34759577 (-) False fgf14
XM_022680633.1 mRNA upstream 546247 34550426 ~ 34728940 (-) False fgf14
XR_002651393.1 other downstream 766789 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 826383 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 1230535 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 2099140 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 5314988 28686050 ~ 28687679 (-) True G170854
TU232866 other upstream 933126 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 1217536 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 1366264 35370443 ~ 35371387 (-) False olig2

Expression Profile