RNA id: TU232897


Basic Information

Item Value
RNA id TU232897
length 481
RNA type TUCP
GC content 0.60
exon number 2
gene id G172060
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 35221715 ~ 35222225 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cccgggggctggcggcagggagaggccggggaaaacaggagaccgaacgggagactggacagggaactggacaggagatggagacaggacaggggacagagactggacggggaactggacaggggacggagactggacggggaactggacaggtgactgagactggacggggaactggacaggtgactgagactggacggggaactggacaggtgactgagactggacggggaactggacaggtgacggagactggacatgagacagagactggacgggaccggacatgggaacagggacaaGAACATTGACGGGGACGGAAACAAACACAGTGACTGGGACAGGAACAGTAAAACCACAGGGGACAGGAACAGGCACGAACACAGATacagggaccaggacagggagagacaggggaacCAAAAACacaggtgggtgcccaggaccggcaaaagtctgtggggatAGCCTGGGCACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232895 lncRNA downstream 12529 35196750 ~ 35209186 (-) True G172059
TU232894 lncRNA downstream 63860 35150518 ~ 35157855 (-) True G172058
TU232883 lncRNA downstream 109218 35089737 ~ 35112497 (-) True G172053
TU232882 lncRNA downstream 127271 35084263 ~ 35094444 (-) False G172053
TU232867 lncRNA downstream 237798 34946759 ~ 34983917 (-) True G172040
TU232903 lncRNA upstream 11982 35234207 ~ 35295534 (-) False dnajb11
XM_022680009.1 mRNA downstream 261962 34934188 ~ 34959753 (-) True rftn2
XM_007227764.3 mRNA downstream 301018 34910161 ~ 34920697 (-) True hspd1
XM_007227769.3 mRNA downstream 325503 34890853 ~ 34896212 (-) False sf3b1
XM_022680640.1 mRNA downstream 325503 34891201 ~ 34896212 (-) False sf3b1
XM_007227768.3 mRNA downstream 325503 34891201 ~ 34896212 (-) False sf3b1
XM_007227757.3 mRNA upstream 72044 35294269 ~ 35299796 (-) True dnajb11
XM_022680645.1 mRNA upstream 83624 35305849 ~ 35309311 (-) True LOC107197919
XM_022680646.1 mRNA upstream 90033 35312258 ~ 35315896 (-) True LOC103022973
XM_007227756.3 mRNA upstream 99335 35321560 ~ 35327292 (-) True ercc1
XM_022680647.1 mRNA upstream 99335 35321560 ~ 35327264 (-) False ercc1
TU232866 other downstream 262003 34937305 ~ 34959712 (-) False rftn2
XR_002651393.1 other downstream 1985837 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 2045431 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 2449583 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 3318188 31900348 ~ 31903527 (-) False gabpa
TU232919 other upstream 148218 35370443 ~ 35371387 (-) False olig2

Expression Profile