G172059


Basic Information

Item Value
gene id G172059
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 35196750 ~ 35209186 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU232895
cacactcttggcatcaatctctcaatgagcttcaagaggtggccacctgaaataaaagttttccaacagtcttgaaggaaggaaggaaggagttcccagaggtgtttattagcacttgttgctcctttgtcttcttcactctgtgctccagctcaccccaaaccctaaatctggattgggttcaggtccagtgactgtggaggacagctcattttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232895 True 216 lncRNA 0.46 2 35196750 35209186

Neighbor

gene id symbol gene type direction distance location
hspd1 hspd1,LOC107690611,LOC107569661 coding downstream 276053 34910161 ~ 34920697 (-)
sf3b1 sf3b1,LOC107731751,LOC100380860,LOC107690614 coding downstream 300538 34880505 ~ 34896212 (-)
ankrd44 ankrd44,LOC107719801,LOC107595853,LOC107659898 coding downstream 318101 34840375 ~ 34878649 (-)
LOC111194949 NA coding downstream 374961 34819096 ~ 34821789 (-)
LOC111194948 NA coding downstream 380831 34813427 ~ 34815919 (-)
LOC107197919 NA coding upstream 96663 35305849 ~ 35309311 (-)
LOC103022973 NA coding upstream 103072 35312258 ~ 35315896 (-)
ercc1 ercc1,LOC102784801,LOC107731738 coding upstream 112374 35321560 ~ 35327292 (-)
olig1 NA coding upstream 145153 35354339 ~ 35356670 (-)
LOC103039907 zgc:112056,LOC103039907,LOC108412974,LOC105908687,LOC108266095,LOC107731744,LOC107570103,LOC107595889,LOC106582488,LOC107659887 coding upstream 201468 35410654 ~ 35416880 (-)
G172058 NA non-coding downstream 38895 35150518 ~ 35157855 (-)
G172053 NA non-coding downstream 84253 35084263 ~ 35112497 (-)
G172040 NA non-coding downstream 212833 34946759 ~ 34983917 (-)
G172037 mob4,LOC103042482,LOC104944497,LOC108432589,LOC105923971,LOC101078365 non-coding downstream 268064 34926123 ~ 34928686 (-)
G172034 NA non-coding downstream 272385 34922201 ~ 34924365 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other downstream 236997 34933012 ~ 34959753 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other downstream 922961 34255377 ~ 34273789 (-)
LOC103024438 LOC108426008 other downstream 1878399 33307993 ~ 33318351 (-)
LOC103028031 LOC108426040 other downstream 1960872 33214322 ~ 33235878 (-)
G171553 NA other downstream 2020466 33174053 ~ 33176284 (-)
G172060 NA other upstream 12529 35221715 ~ 35222225 (-)
dnajb11 dnajb11,LOC107731764,LOC107690604,LOC107659888,LOC107595843,LOC107719809 other upstream 25021 35234207 ~ 35299796 (-)
olig2 olig2,olig3,LOC107731746,LOC107719825,LOC107659900,LOC107690629,LOC107569749 other upstream 160197 35369383 ~ 35371404 (-)

Expression


Co-expression Network