LOC107197919


Basic Information

Item Value
gene id LOC107197919
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 35305849 ~ 35309311 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680645.1
TATTTTGGACATTTCAGAACTAGAAATCTTCACATGAAGAACATCccatttttttcatgactttgtaaaaaaaatagtccgGTCCTCTCAACATGGTAcataaaacttttttgtttaagaCATTTGACAATAATGTAGAAATACTGTAGTACACAGAACACTTTTTGAAATTTGATACAGAATTAACAACTAGACAAATTGCATATGTCCACTAAGTCACCCTAAACTCCTCCAAAATCCCCTCATACTCTTCTGTGGTGTGGAAACTGTGCAGATGTGGTCAGAGGATGTGTTTGTGGGGGCTGCCTTGtctataatatctatatattgACTGTGCTTCTTGCATATGTGTGTCAGTGCAGCGTGAAAACATGTTGCTGAGCGTCTCGCTGCTCGTCCTTTCCATCCTTCCTGTATCAGGAGCGATGAAGAGTGGTATTGTTGAAGGACATGAAGTCAAGCCTCACTCTAGACCCTACATGGTGTCGGTTCAGCTTAACAAAGAACACAAGTGTGGTGGGATGCTCATCAGAGAGGACTATGTGCTCACTGCAGCCCACTGTCTCAATGGTTACAAGACTtctgagaaaaaacagaaactcGAAGTTCTGCTGGGAGCTCATAACATCAGTCGAAAGGAGCCGAGTCAGAGGAGAATCGAAGTGAAGAAATACATCAAGCATCCCTCATACAAAGAGGGACAACATAACCACAGCTATGATATCATGCTACTAAAtCTGAAGAACAAAGCCAAGCTGACCAAGTCTGTACAGATCATCACTCTTCCtaagaacaataaaaatattccaGCCAATAAGGATTGTTCTATAGCAGGCTGGGGTAAGACAGAACCATGTGGTTCTGCTTCAGATGTTCTGAAAGAGGTCCGACTCAAACTACAGTTTAACGTCGAATGTAAGAACATATGGCAGATGTACTTCGATTCCCAACGCATGATCTGCACCGCCTCCGATGGAGAAAAGGGCTTCTGTCAGGGTGATTCAGGAAGTCCTCTAATGTGTAACAACAAACTGACGGGATTGGCTGTGTTTACGTACCCCGGTAACTGCATAAAGCGCAAGTACCCAGGAGTGTACATTAAAGTAGCCTACTTCCATCCATGGATTCAGAAAGAAATTAATCCCCCCTGAGATTTATTTTCTGCTTATAATCACACTTCAACAAAGTGCATATTGTATGAATCAAGCATGTTTTcactcttctgtttatttttttgtctaacTGGTCCTTTTTTGTGACaaattgttttttagttttaatacaattattatttttacaatatattaatatcacaAAAAGCAATCAACCTAACTTATTTTTACACAAGCCATTAAGAGATTAATAAAGTCTCCACAGTATGGAGTGCATCTTTCCAGGCATTAATAGTTCTAGATTTGGTGCCATGAATGCGATGATATCAAGCATTGACaattttttaatcaaatctTTGAAGTTCATTGTtt

Function

GO: NA

KEGG:

id description
K01353 GZMB; granzyme B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680645.1 True 1484 mRNA 0.39 5 35305849 35309311

Neighbor

gene id symbol gene type direction distance location
satb2 satb2,LOC107690605,LOC107731767,LOC106586344 coding downstream 54313 35181526 ~ 35251536 (-)
hspd1 hspd1,LOC107690611,LOC107569661 coding downstream 385152 34910161 ~ 34920697 (-)
sf3b1 sf3b1,LOC107731751,LOC100380860,LOC107690614 coding downstream 409637 34880505 ~ 34896212 (-)
ankrd44 ankrd44,LOC107719801,LOC107595853,LOC107659898 coding downstream 427200 34840375 ~ 34878649 (-)
LOC111194949 NA coding downstream 484060 34819096 ~ 34821789 (-)
LOC103022973 NA coding upstream 2947 35312258 ~ 35315896 (-)
ercc1 ercc1,LOC102784801,LOC107731738 coding upstream 12249 35321560 ~ 35327292 (-)
olig1 NA coding upstream 45028 35354339 ~ 35356670 (-)
LOC103039907 zgc:112056,LOC103039907,LOC108412974,LOC105908687,LOC108266095,LOC107731744,LOC107570103,LOC107595889,LOC106582488,LOC107659887 coding upstream 101343 35410654 ~ 35416880 (-)
LOC103038560 NA coding upstream 108180 35417491 ~ 35422685 (-)
G172059 NA non-coding downstream 96663 35196750 ~ 35209186 (-)
G172058 NA non-coding downstream 147994 35150518 ~ 35157855 (-)
G172053 NA non-coding downstream 193352 35084263 ~ 35112497 (-)
G172040 NA non-coding downstream 321932 34946759 ~ 34983917 (-)
G172037 mob4,LOC103042482,LOC104944497,LOC108432589,LOC105923971,LOC101078365 non-coding downstream 377163 34926123 ~ 34928686 (-)
dnajb11 dnajb11,LOC107731764,LOC107690604,LOC107659888,LOC107595843,LOC107719809 other downstream 6053 35234207 ~ 35299796 (-)
G172060 NA other downstream 83624 35221715 ~ 35222225 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other downstream 346096 34933012 ~ 34959753 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other downstream 1032060 34255377 ~ 34273789 (-)
LOC103024438 LOC108426008 other downstream 1987498 33307993 ~ 33318351 (-)
olig2 olig2,olig3,LOC107731746,LOC107719825,LOC107659900,LOC107690629,LOC107569749 other upstream 60072 35369383 ~ 35371404 (-)

Expression


Co-expression Network