LOC103038560


Basic Information

Item Value
gene id LOC103038560
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 35417491 ~ 35422685 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007227749.3
GAAAACGAAACTTTGAACAGGACTGATGGAGTCAGCTGTGAGGTAAAACGAAACTAGAGCAATGGACTGGAGGCTGTACCACTCTCACATCTcacacatcaaacacacacacccaccacacctgagagagaaagactggaCACGCGGAGAGTCAGCAGTATCTGGATTAAACTATGGCGCCGAGAGATTCCAAGAAGCTGGAGGAGATAAGTAACAGTCTAAACCAGCAGTATGAGGAAAAGGTGCGTCCCTGCATCGATCTTGTGGATTCACTCAGGTCTTTAGGAGTGGAGAAGGACCTGAGTTTACCGGCCATCGCTGTTATAGGTGATCAAAGCTCAGGAAAAAGCTCAGTGCTGGAAGCACTTTCGGGCGTGGCATTGCCCAGAGGCACAGGTATTGTGACTCGCTGTCCTTTGGTGCTGAAACTAAAGAGAGTTGAAACAGGAGTGGCATGGTCTGGACACATTTCTTaccagaaaaaagaaagggttCTTAGTAAGCCAGAAGATGTGGGAACTGCTGTTTCAGATGCTCAGAATGCCTTGGCTGGAAATGGAAAGGGAATCAGTCATGATATGATCACTCTGGAGATCAAATCCAGCAAAGTTCCGGATCTCACTCTTATTGATCTGCCGGGCATTGCCAGAGTAGCTACAGGTGACCAACCAGTGGACATTGAGAAACAGATCAAAGATCTCATTGAGAAAttcattaagagacaagaaaccaTTAGCTTGGTGGTTGTGCCAGCGAACATTGACATTGCCACTACTGAGGCACTGAAGATGGCAAGCAAAGTGGATCCCAATGGTCTCAGGACACTCGGTATTCTAACCAAGCCTGATTTGGTGGATAAAGGTGCGGAGGATACAGTGGTGAGTACGGTCAATAATCAGGTGATCACACTGAAGAAGGGCTACATGATGGTGAAGTGTCGTGGACAGCAAGACATCAATGCCAATCTGAGTCTAGCTAAAGCccttcagaaagagagagacttctTTGAGCAACATCCCCATTTCAGGCCTCTTCTGGAAGATGGAAGAGCCACTGTGCCCCTACTGGCAGAGAGACTAACAAAGGAACTGGTGGAACACATTGGCAGGTCACTCCCACATCTCAAACAACAAATTGATCTAAAACTGGAGGTGACAGAAAAGAAGCTGAAACAGCTTGGTGACGGAGTTCCTCAAGACGAAAATGAGAAGAAGAGCTTCCTCATTCAGaaaatCAACAGTTTTAACCAGATCCTTACAGATGTGATGAGGGCTGAGGAAGACACGAGCTCAGGCACCAAAGTTTTCACCAAAATCAGGGCTGAGTTCACAAACTGGAAATCTCAGCTGGATAAAAAGACTACCACATTTGAAGAAAACCTCAGGGATGAGGTAGAAGAGTACTCAAGGGTCCGGAGGGGAAAGGAGCTTCCTGGATTTGTTAACTACAGGACGTTTGAGAACATTGCCAGGAAGCACATAAAGGAGCTGGAAGAACCTGCCTTACAGTTACTGACGGATGTTACAGAGATCGTTCACTCATGCCTGAACAAAATTGCGAATACTCATTTTGAGGCGTATTCCAACCTGCTGAGGGCGGCTAAAGGGCCTATTGAGGATCTGCATGAGGAGGAATATGAAAAAGCCAAGGAGAAGATAAAGTCTCAGTTTAGGATGGAAAGGCTAGTCTATTCTCAGGATAGTCTCTACAGCTCAAAACTAGAATCGGTCAAGAGCAAACCAGAGCCGAAGAGATTTGGCTTCTCCTATCCCATGAGTGCGGACGTTCGGGAGATGGCTCAGCACCTAAGTGCCTACTTTGTGattaCCACTGAGCGTCTGGCTAACCAGGTGCCTCTGATAGTGCAGTATCATGTGCTGCACTGGTACATTTCTCACCTCCAGACGGCCATGTTAGCCATGATTGGAGAAAAGAATGCAGTGAAGCTCATTGAAGAGGATTCTGACGTCGCCCGTCGCAGGAAGACAGCATGCGAACGCATAGACCGCCTTAGACAAGCCCGGCAGGTCCTGTCCAAGTTTGTACTCTCTGCCTCTTAACTGCTTCAGGAGGAGATGGATGGAGACTTTAAATTTTGACATGTGTGCTCTTTTTAATTCTTAgcttgcttttttgttattaggtatattgcaaaatatattaGTTTTTGCTGTGACAAAACTGCAGCATCACATAGTTAAAGCAGATGTTTGTCTTTCATTAAAACTTTTGTGGACATTACCACGTGTCATGTTTTGTCATGTTTGTGTGGAGGATGTCCTGCTATGATTTTACCAAGAAAAGATCATGGATTTGTATGTTAGGCATCTGGTCAGTTATCTGTCCTTGTATTTAACCTTTTCCAGCTGAATGTATTTtggtattcttttttttccctttttttactAAATGGTATTGTTATACtaaagtgtgtaagactggtggaggagaacatgatgccaagatgcataa

Function

GO:

id name namespace
GO:0009615 response to virus biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14754 MX; interferon-induced GTP-binding protein Mx

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007227749.3 True 2472 mRNA 0.45 12 35417491 35422685

Neighbor

gene id symbol gene type direction distance location
LOC103039907 zgc:112056,LOC103039907,LOC108412974,LOC105908687,LOC108266095,LOC107731744,LOC107570103,LOC107595889,LOC106582488,LOC107659887 coding downstream 611 35410654 ~ 35416880 (-)
olig1 NA coding downstream 60821 35354339 ~ 35356670 (-)
ercc1 ercc1,LOC102784801,LOC107731738 coding downstream 90199 35321560 ~ 35327292 (-)
LOC103022973 NA coding downstream 101595 35312258 ~ 35315896 (-)
LOC107197919 NA coding downstream 108180 35305849 ~ 35309311 (-)
G172059 NA non-coding downstream 208305 35196750 ~ 35209186 (-)
G172058 NA non-coding downstream 259636 35150518 ~ 35157855 (-)
G172053 NA non-coding downstream 304994 35084263 ~ 35112497 (-)
G172040 NA non-coding downstream 433574 34946759 ~ 34983917 (-)
G172037 mob4,LOC103042482,LOC104944497,LOC108432589,LOC105923971,LOC101078365 non-coding downstream 488805 34926123 ~ 34928686 (-)
olig2 olig2,olig3,LOC107731746,LOC107719825,LOC107659900,LOC107690629,LOC107569749 other downstream 46087 35369383 ~ 35371404 (-)
dnajb11 dnajb11,LOC107731764,LOC107690604,LOC107659888,LOC107595843,LOC107719809 other downstream 117695 35234207 ~ 35299796 (-)
G172060 NA other downstream 195266 35221715 ~ 35222225 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other downstream 457738 34933012 ~ 34959753 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other downstream 1143702 34255377 ~ 34273789 (-)

Expression


Co-expression Network