G172058


Basic Information

Item Value
gene id G172058
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 35150518 ~ 35157855 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU232894
ctgatgttcaatcttcattaattgcacattgcaccagtaagagcagagtgtgaaggttcaattagcagggtaagagcacagttctgctctaaatattgcaatgcacacaacattatgggtgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggagcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacggtatccagggtaacgtcagcataccaccaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtcggAAAGGGAtgttcgggtgctaacccggattgtatccaaaaaaacataaaacc

Function

GO:

id name namespace
GO:0004300 enoyl-CoA hydratase activity molecular_function

KEGG:

id description
ko00650 Butanoate metabolism
ko00062 Fatty acid elongation
ko00071 Fatty acid degradation
ko01040 Biosynthesis of unsaturated fatty acids
ko00280 Valine, leucine and isoleucine degradation
ko00930 Caprolactam degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU232894 True 358 lncRNA 0.45 2 35150518 35157855

Neighbor

gene id symbol gene type direction distance location
hspd1 hspd1,LOC107690611,LOC107569661 coding downstream 229821 34910161 ~ 34920697 (-)
sf3b1 sf3b1,LOC107731751,LOC100380860,LOC107690614 coding downstream 254306 34880505 ~ 34896212 (-)
ankrd44 ankrd44,LOC107719801,LOC107595853,LOC107659898 coding downstream 271869 34840375 ~ 34878649 (-)
LOC111194949 NA coding downstream 328729 34819096 ~ 34821789 (-)
LOC111194948 NA coding downstream 334599 34813427 ~ 34815919 (-)
satb2 satb2,LOC107690605,LOC107731767,LOC106586344 coding upstream 23671 35181526 ~ 35251536 (-)
LOC107197919 NA coding upstream 147994 35305849 ~ 35309311 (-)
LOC103022973 NA coding upstream 154403 35312258 ~ 35315896 (-)
ercc1 ercc1,LOC102784801,LOC107731738 coding upstream 163705 35321560 ~ 35327292 (-)
olig1 NA coding upstream 196484 35354339 ~ 35356670 (-)
G172053 NA non-coding downstream 38021 35084263 ~ 35112497 (-)
G172040 NA non-coding downstream 166601 34946759 ~ 34983917 (-)
G172037 mob4,LOC103042482,LOC104944497,LOC108432589,LOC105923971,LOC101078365 non-coding downstream 221832 34926123 ~ 34928686 (-)
G172034 NA non-coding downstream 226153 34922201 ~ 34924365 (-)
G172032 coq10b,LOC107569649,LOC107690612,LOC107731759,LOC107659895,LOC107719803 non-coding downstream 241562 34898209 ~ 34908956 (-)
G172059 NA non-coding upstream 38895 35196750 ~ 35209186 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other downstream 190765 34933012 ~ 34959753 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other downstream 876729 34255377 ~ 34273789 (-)
LOC103024438 LOC108426008 other downstream 1832167 33307993 ~ 33318351 (-)
LOC103028031 LOC108426040 other downstream 1914640 33214322 ~ 33235878 (-)
G171553 NA other downstream 1974234 33174053 ~ 33176284 (-)
G172060 NA other upstream 63860 35221715 ~ 35222225 (-)
dnajb11 dnajb11,LOC107731764,LOC107690604,LOC107659888,LOC107595843,LOC107719809 other upstream 76352 35234207 ~ 35299796 (-)
olig2 olig2,olig3,LOC107731746,LOC107719825,LOC107659900,LOC107690629,LOC107569749 other upstream 211528 35369383 ~ 35371404 (-)

Expression


Co-expression Network