G172040


Basic Information

Item Value
gene id G172040
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 34946759 ~ 34983917 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU232867
ccgaacatccctttcagacaccttcctcttacagcatccacagttaatcctgttggatgtggttggtccttcttggtggtatgctgacattaccctggataccgtggctcttgatgcgtcacaaagacttgctgtcttggtcacagatgctccagcaagacgtgcaccaacaatttgtccttttttgaactctggtatgtcacccataatgttgtgtacactgcaatataatatttagagcagaactgtgctcttaccctgctaattgaaccttcacactctgctcttactggtgcaataatgtgcaattaatgaagattgaacaccaggctgctccaatttagacatgaaacctaaaatcccac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232867 True 365 lncRNA 0.44 2 34946759 34983917

Neighbor

gene id symbol gene type direction distance location
hspd1 hspd1,LOC107690611,LOC107569661 coding downstream 26062 34910161 ~ 34920697 (-)
sf3b1 sf3b1,LOC107731751,LOC100380860,LOC107690614 coding downstream 50547 34880505 ~ 34896212 (-)
ankrd44 ankrd44,LOC107719801,LOC107595853,LOC107659898 coding downstream 68110 34840375 ~ 34878649 (-)
LOC111194949 NA coding downstream 124970 34819096 ~ 34821789 (-)
LOC111194948 NA coding downstream 130840 34813427 ~ 34815919 (-)
satb2 satb2,LOC107690605,LOC107731767,LOC106586344 coding upstream 197609 35181526 ~ 35251536 (-)
LOC107197919 NA coding upstream 321932 35305849 ~ 35309311 (-)
LOC103022973 NA coding upstream 328341 35312258 ~ 35315896 (-)
ercc1 ercc1,LOC102784801,LOC107731738 coding upstream 337643 35321560 ~ 35327292 (-)
olig1 NA coding upstream 370422 35354339 ~ 35356670 (-)
G172037 mob4,LOC103042482,LOC104944497,LOC108432589,LOC105923971,LOC101078365 non-coding downstream 18073 34926123 ~ 34928686 (-)
G172034 NA non-coding downstream 22394 34922201 ~ 34924365 (-)
G172032 coq10b,LOC107569649,LOC107690612,LOC107731759,LOC107659895,LOC107719803 non-coding downstream 37803 34898209 ~ 34908956 (-)
G171995 NA non-coding downstream 111347 34835057 ~ 34835412 (-)
G172027 NA non-coding downstream 112383 34833723 ~ 34834376 (-)
G172053 NA non-coding upstream 100346 35084263 ~ 35112497 (-)
G172058 NA non-coding upstream 166601 35150518 ~ 35157855 (-)
G172059 NA non-coding upstream 212833 35196750 ~ 35209186 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other downstream 672970 34255377 ~ 34273789 (-)
LOC103024438 LOC108426008 other downstream 1628408 33307993 ~ 33318351 (-)
LOC103028031 LOC108426040 other downstream 1710881 33214322 ~ 33235878 (-)
G171553 NA other downstream 1770475 33174053 ~ 33176284 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other downstream 2170741 32758507 ~ 32776018 (-)
G172060 NA other upstream 237798 35221715 ~ 35222225 (-)
dnajb11 dnajb11,LOC107731764,LOC107690604,LOC107659888,LOC107595843,LOC107719809 other upstream 250290 35234207 ~ 35299796 (-)
olig2 olig2,olig3,LOC107731746,LOC107719825,LOC107659900,LOC107690629,LOC107569749 other upstream 385466 35369383 ~ 35371404 (-)

Expression


Co-expression Network