LOC111194949


Basic Information

Item Value
gene id LOC111194949
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 34819096 ~ 34821789 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680635.1
GCAAAAATGTAATGCTATGCTAACTACAGTGGGTGCCAGGTAACTAGTGCTAAGCTAAATGCTAACCTGCTAAACAGCTGCAATCCTATTCAAAACTGAATGTTTGaactaaaaatgtaatgataattatctataaaaaatgtgttatttaaccacTTCATCATCCACCTTAACCAGGCAGTACTGTGAATAATGCTAAAAGCCTAAAATACAcataatattatgtatatttatatattatatattattatatatgattattattactacattattGTGCTAACATTGGgctaacattttaaatgtaaacaaattgCACTGGGCAAGTTACCTAGGATACGGTGGTGACATCACCAAGCCACTGTACATAAGGACTTGTGTCCCTTATTATTCCATCAGTAGGTGAATCTACACCTACTGTATTGGACGTCTGAGGCTTTTCTCCATTTAAAGATGGATTTTCGTGAGAACTTTGAGCCCTTTTTTCCACCGCTGCCGCCCTCTGGACCTCGTCCCATCAGGCCCAAGAGTCGCAGGAGTCTGAAGGTGCTGAAACCGGAATGGCTGGAGGACTCCTTCACATATGAGGAGTTCCTTTCCAGACCATTTCCTCAGCACCCCGCTCCTCCACCTGTACCTCCGCCTGTCACTACCCAGCCAGACATGGTGAATAAAGAGCCGGCCTACTATTCACCGGGTAGCAGGATCCCGATCCTAGACAGGCGGAGGAAGCAGAGGCCAGTCCTCGCTGTGGAGCAGCCTACAATCAATATGGCTGCCCACAGCATCCAGGACAAAGCTGCACAGGTGGAGAGAGCCCGCAGGAAGCCCAAAATCGTCAGGGCAGCTCCTCAGGCTGTTGAGAGAGGTCAGGGACTGGAGCAGCCACCGGTGCTACCAGCCCTGACCCGGGAGGAGCCCCTCAACAGGCCTGGGGAAGCTCTCGGCCAGGCTCTGTGCTTGCTGCAGGATGAGGAATGGGAACGAAAAACCGAGGGACTGCGGCTTGTGCGAGCTCTGGCTCAACACCATGTTGATGTGGTGCTGCCGGAGCTCCACAGCATCAGCACAGCCGTCATTGAGGAGATAAAAAACCTCAGGACATTAGTCTCTCGGGACGCCATTTACACCATGGCACACCTGTTCCATTACCTGCAGCACAGTATGGACAGCGAGGTCGAGGGCGCCGCTCGCACCCTCCTGCACAAGGCTGGTGAGGCCAGTCTGTTTATTAAGGAGGGTGTGGAGCTCGCCCTCAGCATGATGGTGCACTCCTGTTCGCCTGGCCGAGTCCTGCGCGGGCTGCTGGCCGGTGGATTcagACACAGAAACCCTGCCACCAGGGCAGCCACTGCACTTTGCCTAGATAGGCTAGTGCATGTGATGGGGGCATCCCGTGTGCTGAAGGGCAGGACATTTACCAGCAAAATCCTTCCTGCCATCAGCACACTGGCGTTCGACGCTGCCCAGGAAGTGAGGACTCCTGCACGAGCCGCCTTCCGTTTTTTGGGCGGGCACAGAGAGGCTGCGGCAGCGGTGGAAAAATTTATTTCCATCAGAGATCAGGCCTCAGTCAAGAAACTACttttaaattaatcaaatcaaatgaatcagttgtacagtttttgtatatagtttagaTGTATTCGGTGTTCAGAGTGGGTTTGGGGTGAAATCTCTGTTTTAGAGAAGCTTACAGAGTCAGAGCTGTTCACAGTGGTGGAGACAGGAACCACATCTGAAGAGGTGGTCAAGGCAGGGACTCCACTTTCTTACCAGAGGTGGGGTCTCTGCTTGGCGGGAAACGCACCTGCCCTGTGGCATCAGGGCATCCCAGTCAACCAGCTGGGAATGTCCTGCCCCAAAACAAGCCCTACAAAGCTTGTGAGGGGTTCGCCCAGGGCCGGCCGGCGTCCCCCAGCCACTCTTTTAGAGCCAGTCCACCCTTCAGACATATGGGTCCTGTCTCCATCACTCTGACCAGTTCTGACTCGGTCAGCTTCTCTGGAACAGAGTACACCTGAACACCGAATACATCTCATCCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680635.1 True 2046 mRNA 0.51 6 34819096 34821789

Neighbor

gene id symbol gene type direction distance location
LOC111194948 NA coding downstream 3177 34813427 ~ 34815919 (-)
fgf14 fgf14 coding downstream 59519 34550426 ~ 34759577 (-)
nalcn nalcn coding downstream 373857 34323173 ~ 34445239 (-)
zic5 zic5 coding downstream 792258 34021969 ~ 34026838 (-)
LOC103047371 LOC103047371 coding downstream 943791 33870988 ~ 33875305 (-)
ankrd44 ankrd44,LOC107719801,LOC107595853,LOC107659898 coding upstream 18586 34840375 ~ 34878649 (-)
sf3b1 sf3b1,LOC107731751,LOC100380860,LOC107690614 coding upstream 58716 34880505 ~ 34896212 (-)
hspd1 hspd1,LOC107690611,LOC107569661 coding upstream 88372 34910161 ~ 34920697 (-)
satb2 satb2,LOC107690605,LOC107731767,LOC106586344 coding upstream 359737 35181526 ~ 35251536 (-)
LOC107197919 NA coding upstream 484060 35305849 ~ 35309311 (-)
G172007 NA non-coding downstream 33203 34785639 ~ 34785893 (-)
G171994 NA non-coding downstream 152266 34642717 ~ 34666830 (-)
G171992 NA non-coding downstream 204547 34613708 ~ 34614549 (-)
G171982 NA non-coding downstream 239277 34486295 ~ 34579819 (-)
G171979 NA non-coding downstream 258713 34471788 ~ 34560383 (-)
G172027 NA non-coding upstream 11934 34833723 ~ 34834376 (-)
G171995 NA non-coding upstream 13268 34835057 ~ 34835412 (-)
G172032 coq10b,LOC107569649,LOC107690612,LOC107731759,LOC107659895,LOC107719803 non-coding upstream 76420 34898209 ~ 34908956 (-)
G172034 NA non-coding upstream 100412 34922201 ~ 34924365 (-)
G172037 mob4,LOC103042482,LOC104944497,LOC108432589,LOC105923971,LOC101078365 non-coding upstream 104334 34926123 ~ 34928686 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other downstream 545307 34255377 ~ 34273789 (-)
LOC103024438 LOC108426008 other downstream 1500745 33307993 ~ 33318351 (-)
LOC103028031 LOC108426040 other downstream 1583218 33214322 ~ 33235878 (-)
G171553 NA other downstream 1642812 33174053 ~ 33176284 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other downstream 2043078 32758507 ~ 32776018 (-)
rftn2 rftn2,LOC107595849,LOC107719806,LOC107659885,LOC107690607 other upstream 111223 34933012 ~ 34959753 (-)
G172060 NA other upstream 399926 35221715 ~ 35222225 (-)
dnajb11 dnajb11,LOC107731764,LOC107690604,LOC107659888,LOC107595843,LOC107719809 other upstream 412418 35234207 ~ 35299796 (-)
olig2 olig2,olig3,LOC107731746,LOC107719825,LOC107659900,LOC107690629,LOC107569749 other upstream 547594 35369383 ~ 35371404 (-)

Expression


Co-expression Network