RNA id: TU232894


Basic Information

Item Value
RNA id TU232894
length 358
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G172058
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 35150518 ~ 35157855 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgatgttcaatcttcattaattgcacattgcaccagtaagagcagagtgtgaaggttcaattagcagggtaagagcacagttctgctctaaatattgcaatgcacacaacattatgggtgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggagcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacggtatccagggtaacgtcagcataccaccaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtcggAAAGGGAtgttcgggtgctaacccggattgtatccaaaaaaacataaaacc

Function

GO:

id name namespace
GO:0004300 enoyl-CoA hydratase activity molecular_function

KEGG:

id description
ko00650 Butanoate metabolism
ko00062 Fatty acid elongation
ko00071 Fatty acid degradation
ko01040 Biosynthesis of unsaturated fatty acids
ko00280 Valine, leucine and isoleucine degradation
ko00930 Caprolactam degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232883 lncRNA downstream 38021 35089737 ~ 35112497 (-) True G172053
TU232882 lncRNA downstream 56074 35084263 ~ 35094444 (-) False G172053
TU232867 lncRNA downstream 166601 34946759 ~ 34983917 (-) True G172040
TU232857 lncRNA downstream 214726 34933012 ~ 34935792 (-) False rftn2
TU232861 lncRNA downstream 221832 34926123 ~ 34928686 (-) True G172037
TU232895 lncRNA upstream 38895 35196750 ~ 35209186 (-) True G172059
TU232903 lncRNA upstream 76352 35234207 ~ 35295534 (-) False dnajb11
XM_022680009.1 mRNA downstream 190765 34934188 ~ 34959753 (-) True rftn2
XM_007227764.3 mRNA downstream 229821 34910161 ~ 34920697 (-) True hspd1
XM_007227769.3 mRNA downstream 254306 34890853 ~ 34896212 (-) False sf3b1
XM_007227761.3 mRNA upstream 23671 35181526 ~ 35251536 (-) False satb2
XM_015603402.2 mRNA upstream 23671 35181526 ~ 35251536 (-) False satb2
XM_007227759.3 mRNA upstream 23671 35181526 ~ 35251535 (-) True satb2
XM_007227760.3 mRNA upstream 23671 35181526 ~ 35251534 (-) False satb2
XM_007227757.3 mRNA upstream 136414 35294269 ~ 35299796 (-) True dnajb11
TU232866 other downstream 190806 34937305 ~ 34959712 (-) False rftn2
XR_002651393.1 other downstream 1914640 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 1974234 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 2378386 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 3246991 31900348 ~ 31903527 (-) False gabpa
TU232897 other upstream 63860 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 212588 35370443 ~ 35371387 (-) False olig2

Expression Profile