RNA id: TU232903


Basic Information

Item Value
RNA id TU232903
length 570
lncRNA type read_through
GC content 0.38
exon number 3
gene id dnajb11
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 35234207 ~ 35299796 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATTTACATCATACTGTTGTGTTGCAGGTTCATATCGCCAGGGATAAAATCACCAAACCTGGATCCAGATTGTGGAAGAAGGGCGAAGGGCTTCCCAACTTTGACAACAACAATATCCGCGGATCACTTATAATAACATTTGATGTGGATTTCCCCAAGGAACAGCTTGATGATCAGCAGAAAGATGGTATAAAGCAGCTGTTGAAGCAGGCTCCAGCTCAGAAGGTTTATAATGGCTTGCAGGGATACTGACACACCATCCAGTGAATTTCGGACTAAATTGAACTGCCCCGTTCCGTAACACACCACATGAAAGCTCACACGggcactcacacacagagaaacaagcatctagggtttatttatttctctcagACTGTACTCAGGATAGGTTGACTGTATGTGTGggtttttatttggtatttttaatttttctttttttttttgtgatgattgcaattttattaaacttttttcatgcccaaattatttttctttctttcaatgttttttttaattttttttttacactttcaatagaagtcaatggaAAAGGGtttacccactcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232895 lncRNA downstream 25021 35196750 ~ 35209186 (-) True G172059
TU232894 lncRNA downstream 76352 35150518 ~ 35157855 (-) True G172058
TU232883 lncRNA downstream 121710 35089737 ~ 35112497 (-) True G172053
TU232882 lncRNA downstream 139763 35084263 ~ 35094444 (-) False G172053
TU232867 lncRNA downstream 250290 34946759 ~ 34983917 (-) True G172040
XM_022680009.1 mRNA downstream 274454 34934188 ~ 34959753 (-) True rftn2
XM_007227764.3 mRNA downstream 313510 34910161 ~ 34920697 (-) True hspd1
XM_007227769.3 mRNA downstream 337995 34890853 ~ 34896212 (-) False sf3b1
XM_022680645.1 mRNA upstream 10315 35305849 ~ 35309311 (-) True LOC107197919
XM_022680646.1 mRNA upstream 16724 35312258 ~ 35315896 (-) True LOC103022973
XM_007227756.3 mRNA upstream 26026 35321560 ~ 35327292 (-) True ercc1
XM_022680647.1 mRNA upstream 26026 35321560 ~ 35327264 (-) False ercc1
XM_007227755.3 mRNA upstream 58805 35354339 ~ 35356670 (-) True olig1
TU232897 other downstream 11982 35221715 ~ 35222225 (-) True G172060
TU232866 other downstream 274495 34937305 ~ 34959712 (-) False rftn2
XR_002651393.1 other downstream 1998329 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 2057923 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 2462075 32758518 ~ 32772132 (-) True ndp
TU232919 other upstream 74909 35370443 ~ 35371387 (-) False olig2

Expression Profile