RNA id: XM_022680009.1


Basic Information

Item Value
RNA id XM_022680009.1
length 2787
RNA type mRNA
GC content 0.49
exon number 9
gene id rftn2
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 34933012 ~ 34959753 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctactcTTTTTCTTAAAGCTGCAGATTCAGACTGGAGGCGTTTTATTTCAGCACAGGTTTTATAgaagttaaaataattaaataatcagcAGCTGGTGGCTTTTAGACTGAGCTGGATACTATTTATTTAACGTTAGGGTTTATAATGTTTGATCAGAGTCTGGGTTAGATAGTTTAGGTTAGTTTGCTGGAACTTCTGGGATTTTCCCCCAAAACTGTGAGCACTGCTGCTTCAGGACGTCGTGAGGTTTATTTTtacccctctgttttttttattggagtcTGTAAACTTCCCCCGGTCCGTCTCTCCGTCTCTCCGTCTCTCCACCGCCCTGTTTACCCGGATTACTGCTGCAGAAGTAGAGgatgcagctccagcagcagcagcgggcgCGCTAAGATCTTCCCGCCGGACTCGGAGCTCCTTCCCGCGGTTACCTCCTCCCGCTCCCCCCGCTCCTCGCCATGGGCTGCGGGCTGCGGAAACTGGAAGACCCTGAGGACAGCAGCCCGGGGAAGATCTACTCCACACTGAGGAGACCACAGGTCGAAACCAAGACCGACACCGTGTACGAGTACGTGCTGCTGGACTTCAGCTTAGAAGGAAGTCGACCCACTGTGCAGTACTTGTCCTCTCTGTGTGATCTGCCTCAGGCCCTGCAGCCCTACTACACTCAGGGCTATGTGCTCGCCGCCCTGCATCCCATCATCCTCTCCGTGGGCCGCACACGCTCACTGGCCTGCAGCCTTCTCTACCGCGCCATCCTGGCAAGGCCACGACCGAGTAAGCATGCTGTAGCCATGGTCCACAGTGTTCCGGTGCTGAGGGTAGAGGAATGGCCGCTGCCTGGAGATTCACTGACCAGCGATACAGTGAGAGTCCTCGTAGACCGGgtgaacAGCAATGCTCGGGGAGGTGTGAGGTTTGTAGGCTCGGTGCTCCAGCAggccggaggaggaggaggggggataATATGTAACGGCAGGATGGCGAGTCCCAGACGAGGCTACCGCTCCCCACCACGCACCCCACCAGACGACCGAGAGGTGGAGGATGGAGGATACAGTCCAGACCTGAGGTTGCTGGTGCTGTTTCATTCCTGGGCTCCAGGCTGTGCTCCGCTGGACACGCTGGCCTGCTGCTACCACCAGGGGGCGCTGTCCATGCGCGTCTCCCGAAAGGGCCAAGTTGTGAGCGGATTGGAGGCAGATTGGCTGGAGCTGACTGCAGCGTACTACCGCAAGGGCTGGTCGTTAGTGGACTCGTTTGTGTACTGGGACACACCCAAAGGTGAACCAGTGCCCAGATCTTTAGAGGGTCTGTTTGTGTATGAGGAGAGGAGCACTGCACCACCAGCCAACGACACCATCGTAGTGGAGCAGTGGACAGTGATTGAggtcagctttaaaaaaaaaaaaatatatatatcgtaTTTCACAGACTATAAGGCGTGTGTTTTaaGTGAACCAGTGCCCAGATCTTTAGAGGGTCTGTTTGTGTATGAGGAGAGGAGCACTGCACCACCAGCCAACGACACCATCGTAGTGGAGCAGTGGACAGTGATTGAggtcaGTGAACCAGTGCCCAGATCTTTAGAGGGTCTGTTTGTGTATGAGGAGAGGAGCACTGCACCACCAGCCAACGACACCATCGTAGTGGAGCAGTGGACAGTGATTGAgCAAGTGAATGTTagtaatcagttttttttttttttatctcaggtGGGCTCCTCAGTGAGAAGAGATGTGGTCAGTCACTCGGTCAGTCGAGGAGTGGCAGTCCCTCACGGGGAGGAGCTTTCCCCGTGCTCGGGGGGTATCGGGGGGTTCCCTGTGTTTGGAGGGGGCTACCCCAGTGCCCTGTCCCACCTGGAGGAGGGGGGCTTTGAGCAGGATGATGGGGCAGCcgaggttacctgtatgtgacCAGCCTCGACCGAGCAAATCTGCTTAAACAGAGACATTTCTGATCTGCAATCAAGATTTTTTAATGGGATTTTATaagcttaaatattaagagTCAAGTTTTTTTCACTCTGTCCCTTTGGAAATGAGGTTTTGTGCTCCTTTATTGGAGGCAAActttttagcacttttaaaaaaatgttttttaagaagcCGTAAGGTTCAATTTTTAatactttctcacacacactgaggtTTCATAGTTTCTGGGTTCAAACAGAGCTGTAATTTTACACTTTATGGTCCcaatgcactcacacacacatgcatacatcaCCATGCACCAACATCTCCCTCTACACTTACTGTTTTAGATACATTTAATCTCCCCCACACagacagacgcacacacactctggaGAACATCAAACATCACAATCACTCCATCCATTTCTGCTAGTCTTTAGGGAAACTTCACTCTAAACTTCACTGTTTCACTGTAAATTTATCTTTCTGGCGCAAAACAAAACCATCTGACTCTTACGGCTTCTCTGCTGCTCCACAGGTTTCAGCTCAGTGGGTTTTAGTTTTAAAGCAGTTAGTTGTTCATTAATCTTCTGTGAAATTCCATTGGAAAGTTTTGCCTGTACAGTGTTTTAATCTCACagttaaaaagggaaaaaagcaagGGCACCATCAGTACTCTCACACAAACTCACTAATGGAGACAGACTGGGTTTtacttctttgttttttttttgccctggTCCTGAAGGCTCACTGCCTTCCCATTAAACCCTTTcaaaatgtatatacagctctggaaaaaaaaaagtttcttcagtttctgaatcagtttgtctgattttgctatttatagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232861 lncRNA downstream 5502 34926123 ~ 34928686 (-) True G172037
TU232858 lncRNA downstream 9823 34922201 ~ 34924365 (-) True G172034
TU232854 lncRNA downstream 25232 34898209 ~ 34908956 (-) True G172032
TU232794 lncRNA downstream 98776 34835057 ~ 34835412 (-) True G171995
TU232848 lncRNA downstream 99812 34833723 ~ 34834376 (-) True G172027
TU232882 lncRNA upstream 124510 35084263 ~ 35094444 (-) False G172053
TU232883 lncRNA upstream 129984 35089737 ~ 35112497 (-) True G172053
TU232894 lncRNA upstream 190765 35150518 ~ 35157855 (-) True G172058
TU232895 lncRNA upstream 236997 35196750 ~ 35209186 (-) True G172059
TU232903 lncRNA upstream 274454 35234207 ~ 35295534 (-) False dnajb11
XM_007227764.3 mRNA downstream 13491 34910161 ~ 34920697 (-) True hspd1
XM_007227769.3 mRNA downstream 37976 34890853 ~ 34896212 (-) False sf3b1
XM_022680640.1 mRNA downstream 37976 34891201 ~ 34896212 (-) False sf3b1
XM_007227768.3 mRNA downstream 37976 34891201 ~ 34896212 (-) False sf3b1
XM_007227766.3 mRNA downstream 37978 34880505 ~ 34896210 (-) False sf3b1
XM_007227761.3 mRNA upstream 221773 35181526 ~ 35251536 (-) False satb2
XM_015603402.2 mRNA upstream 221773 35181526 ~ 35251536 (-) False satb2
XM_007227759.3 mRNA upstream 221773 35181526 ~ 35251535 (-) True satb2
XM_007227760.3 mRNA upstream 221773 35181526 ~ 35251534 (-) False satb2
XM_007227757.3 mRNA upstream 334516 35294269 ~ 35299796 (-) True dnajb11
XR_002651393.1 other downstream 1698310 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 1757904 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 2162056 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 3030661 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 6246509 28686050 ~ 28687679 (-) True G170854
TU232897 other upstream 261962 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 410690 35370443 ~ 35371387 (-) False olig2

Expression Profile