RNA id: TU232861


Basic Information

Item Value
RNA id TU232861
length 479
lncRNA type inter_gene
GC content 0.50
exon number 5
gene id G172037
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 34926123 ~ 34928686 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGATATATTGACACAATTTGTGCAGAAAATTTAAGGAAACTCAATCTGTGGAGAATCACACATTAGTACTTGCCTCTTTAGGAGTCTTGTGAGCAGCACAGAGAAAAATCCACTGCTCTGTGGCCGTCatctgtgtgcatgtgtctggGTGGCACTCAGTCTGAAGTTTAACAGCCAGGCCATTGAGTTCCAAACAAAACTGCCTCAGATGCTCGTACTTCCACACTCCTTCATCCTGTCCCTCTGGAGGCTCCATGATCTTCTCTATGTTGGAGCAGTCAGAGCGGATATTTTGCTGGATATACTGTTGCACTGCCAGAGTGCTATCCATCTCCTCAAACGATTCATCAGGCCAGTTGTAAAAGTCCTTCGCCGTGGTGCCTGGTCTGTTCCTCCTCACAACGGTAGCGCCCTCCGCCATGACCATCTCGACCGGCTATGAGCGCAGACTGAGAGACACAGCGCCCCCAGCGGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232858 lncRNA downstream 1758 34922201 ~ 34924365 (-) True G172034
TU232854 lncRNA downstream 17167 34898209 ~ 34908956 (-) True G172032
TU232794 lncRNA downstream 90711 34835057 ~ 34835412 (-) True G171995
TU232848 lncRNA downstream 91747 34833723 ~ 34834376 (-) True G172027
TU232837 lncRNA downstream 106482 34813266 ~ 34819641 (-) True G172019
TU232857 lncRNA upstream 4326 34933012 ~ 34935792 (-) False rftn2
TU232867 lncRNA upstream 18073 34946759 ~ 34983917 (-) True G172040
TU232882 lncRNA upstream 155577 35084263 ~ 35094444 (-) False G172053
TU232883 lncRNA upstream 161051 35089737 ~ 35112497 (-) True G172053
TU232894 lncRNA upstream 221832 35150518 ~ 35157855 (-) True G172058
XM_007227764.3 mRNA downstream 5426 34910161 ~ 34920697 (-) True hspd1
XM_007227769.3 mRNA downstream 29911 34890853 ~ 34896212 (-) False sf3b1
XM_022680640.1 mRNA downstream 29911 34891201 ~ 34896212 (-) False sf3b1
XM_007227768.3 mRNA downstream 29911 34891201 ~ 34896212 (-) False sf3b1
XM_007227767.2 mRNA downstream 34339 34880505 ~ 34891784 (-) True sf3b1
XM_022680009.1 mRNA upstream 5502 34934188 ~ 34959753 (-) True rftn2
XM_007227761.3 mRNA upstream 252840 35181526 ~ 35251536 (-) False satb2
XM_015603402.2 mRNA upstream 252840 35181526 ~ 35251536 (-) False satb2
XM_007227759.3 mRNA upstream 252840 35181526 ~ 35251535 (-) True satb2
XM_007227760.3 mRNA upstream 252840 35181526 ~ 35251534 (-) False satb2
XR_002651393.1 other downstream 1690245 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 1749839 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 2153991 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 3022596 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 6238444 28686050 ~ 28687679 (-) True G170854
TU232866 other upstream 8619 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 293029 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 441757 35370443 ~ 35371387 (-) False olig2

Expression Profile