RNA id: TU232854


Basic Information

Item Value
RNA id TU232854
length 2510
lncRNA type inter_gene
GC content 0.44
exon number 6
gene id G172032
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 34898209 ~ 34908956 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCCCTCACATGATCCATCTATTTTGAAGGAGTGAAACTATTCTGAACTAGATTTTGACAAACAGCAGCACGCCAGACAGAAACCACACCAGACACCAGGgctgatttttaaatataaaaatagtttataaacCATGCAGGCAGGATACATACTCTTCACCTCACACTCACTAAAACCCCCAATCAATCaatactaaaacaaaacaaaaaaaacatatctattTGTACATTGTTGTCCATACACTAGTTTGTGGTCTTACATCAGTTTATGTACACGTGGTTTTCCCCACaaccaaaataaatactttatatgACGTCAAagcatacatattttattaatgataaataatatgTAACTCGctagtttaaaaaaagcagTAAGGGCGTGGGGTGTTGAAATGGAATCTTTGCGGTCTAATGTGGCAGATACCTCACCACTACAGCAAATCTCAGGAGAGCGGTCAgggaacttttattttttatttttttccccctcccgtCTTTTCTCCCAGAGTTTGGGCCCTTAAAGAAGCAGTGGATATCATAACTTGCAAGGAACTATGTGTGTTAAAAATCAACCTTTACAAATATATTGCACGcttttacaataaaaacagtCCTTGGTTTTGGACACTTACTGAGACACACCAAAAGATGTTACGTATCGTGCTCCCGTTGCGTCGATGAAAAGGCAGCAAATTAAATAAGGCACCTTACGTTCCTCTTCCAGACACTAGACACAGGTAAAATTATTGCTATACGAAAGTTTTGTTCAGACTTCAAGTAGCACTTGAGTGACAGAAAGCCTGTGTGATGCTGGTATGGAAGACCGCCACCTGCTGGTGATTCCTTGACTTGACAATGTGCACCCGGCTGcagaataaatcaatcagtcagtcagtcaacaCAGAAATACACTGTACGCTCTCTCTCCGTATGCCTCTCTGCTTATGTCTTATCCCTTTAAAAAGATCCCACATTATTGAACATCCATTCATAGGCTGTTCAATAAACGCAGGTTGTGTTTACACATGATGATCATGGTGTAAAACAAACATCCCTCCTTTCCTGGACTATCCAGTTCTGCTCCGCTTGAAagattttaatgtttatgttcatttacttaaaaaaaaaaaaacccaatgaCATGAGGGACAAGTTAGAGACCCAGTGTTATGCAcacttctgtgttttttttttcttctaagaATATGAAGAGCTTGTTCATTAACTAGCAGTTGAATTAGATATGCTAGATGCACTCAAAACACAGAAatgtgcatattttttttttttgggggtccTCAGGCTAACTGTTCAGAATCTCCTCTCCTGAAAAGCCATTTCTGTCTCGTTCCCACCGAAGCTCGAATGTGCTTAGCCTAAATAACACAGGCTCCATCTATCTCCATGTCCTTCGCCCTGTGCATCATCCCCAAAACCAAAATTGGTTCACTCGCTCCTTCAACAGCTGCCATTAAAAGCATTATGGCTCAAGTGTACTTTGAACACAGTATGTTACCCACAGAAGCAGGAGTGAGGCAGATTGGCAGGGCTCAGCAGCCCAGAAGTTAGATCCAGccacagaaaatataataaaaacataaaaatcaaaTGTTTCCTTTGGACCAGGCACTGTAGTTACTGAGGCACGTGAACTTGTCACCATAAGGCTCGACCCTCGCCCTCTCGCCCCGCTGGCCTTGGAGTGCACAGAGAGAGGCTACGTGTGGTGGACCTCGTGGAACATTAGCTCACGTGGTATCTGCGTCTCAGGGCCGTACAGTTTGCAGGCCCGTCGCTCAAACGCAGACACCATCTGCTTAACCACTTCGTCGAAGAACACGGTGGCCAGCTGAGAATGCAGGAGTGAGCGGAACTCAGCAAAGTCCAGGGTGCACGTTCGAGGGTAGCCAGGTAGTCCAGGACTGAAACGCCAGACTGTCTCCAGATGATTAAAGAGTTTACCATCAGAGCATGAGGCcTTGACCATATGAGGGCGCACTGTCGTAATAAGAGATGTGTAGTTCTCCACCACCGGAGGAAAGCCAACAGTCAGCTTGGCCTTACAGAACCCAGAGCGCCGGAAGACCACATCTGAGCGCTTGCACCATGGAACAAAATGAAGATAGTCCTCCACCTTGGCAACAACCTCATACATCTCCTGCATGGAATACCCAATGATGCGCCTCTCAGAATACTCCTTCCTCTTATTAAAGGAATCAGCAAGGTTGAAAAAGCTTCTGGCTGGAGCGACTACGGCACGGCCAGACACAGTCCTCAGGAGAGGCGGCACTCTGGTCATCAAAATCCCACATGATGACAAATATCTCACTCCATTCCTTCCAGGAGTTTCCCGAGTTGCTGTGGAGGGTAACTGTTTAATACATTCTGCTACCGCTCTCCGCAAACACCGGGACCCTCTCGCCATCTTCACTTCAGCTCCTTTTCACCTTCCCCCTCTCTAACTACTCTACAAGCGCCCAAGCCCCGCCCTCTCCACTACGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232794 lncRNA downstream 62797 34835057 ~ 34835412 (-) True G171995
TU232848 lncRNA downstream 63833 34833723 ~ 34834376 (-) True G172027
TU232837 lncRNA downstream 78568 34813266 ~ 34819641 (-) True G172019
TU232809 lncRNA downstream 112316 34785639 ~ 34785893 (-) True G172007
TU232792 lncRNA downstream 231379 34642717 ~ 34666830 (-) True G171994
TU232858 lncRNA upstream 13245 34922201 ~ 34924365 (-) True G172034
TU232861 lncRNA upstream 17167 34926123 ~ 34928686 (-) True G172037
TU232857 lncRNA upstream 24056 34933012 ~ 34935792 (-) False rftn2
TU232867 lncRNA upstream 37803 34946759 ~ 34983917 (-) True G172040
TU232882 lncRNA upstream 175307 35084263 ~ 35094444 (-) False G172053
XM_007227769.3 mRNA downstream 1997 34890853 ~ 34896212 (-) False sf3b1
XM_022680640.1 mRNA downstream 1997 34891201 ~ 34896212 (-) False sf3b1
XM_007227768.3 mRNA downstream 1997 34891201 ~ 34896212 (-) False sf3b1
XM_007227766.3 mRNA downstream 1999 34880505 ~ 34896210 (-) False sf3b1
XM_007227767.2 mRNA downstream 6425 34880505 ~ 34891784 (-) True sf3b1
XM_007227764.3 mRNA upstream 1205 34910161 ~ 34920697 (-) True hspd1
XM_022680009.1 mRNA upstream 25232 34934188 ~ 34959753 (-) True rftn2
XM_007227761.3 mRNA upstream 272570 35181526 ~ 35251536 (-) False satb2
XM_015603402.2 mRNA upstream 272570 35181526 ~ 35251536 (-) False satb2
XM_007227759.3 mRNA upstream 272570 35181526 ~ 35251535 (-) True satb2
XR_002651393.1 other downstream 1662331 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 1721925 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 2126077 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 2994682 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 6210530 28686050 ~ 28687679 (-) True G170854
TU232866 other upstream 28349 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 312759 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 461487 35370443 ~ 35371387 (-) False olig2

Expression Profile