RNA id: XM_007227767.2


Basic Information

Item Value
RNA id XM_007227767.2
length 4492
RNA type mRNA
GC content 0.49
exon number 22
gene id sf3b1
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 34880505 ~ 34896212 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGAGTTAATCGGATATAGCAGACATTTGTGGGGTGGGATTGGATGGAATGGGAAGGGAACTGGGGGCACCATGATCTCAGCAATTAAGTTCTGATACAGTAGCCATACAACTTTCCTCAACTTCATCCCTCCCAGCCATTTTTATGTtgacatttcagtttttttgctcAGTTCATCCTGTAGATTGAATTGCTTTTCTTAAAGATGTAAGGCTCCAGCTATTACAGctattacagttttattgcaTACTTGGTTATTCCCTTCAAGGGTACACAGTGTCACAGCGTCTATGTCTGAGACACAGCAATCTAGACTTTCACTTCATAAGTATTTATTCTGTAATCTTGATTAGATCTGTAGTCCTATTTTATAAGGTTTCAATACACTTGAAGCATTTTTGAGTGACGTGAGTGAACATTACAGGTGGTATGCTGTTGTGTGTGAGTTCAAACCCTTTTCCAAAGTGTTACTAATGGTAAAGAGAAATTTTCTAGGCTTCTTTTCTGCCGGTTGAAGTCTGACTGCAGAAGGACCCTTGGCACTGAAAGTGGGGCAAAACGCCAGATCCCAAGATGCAGGTCCGGACGTATATGGACGTGATGAAGGAGCAACAACTGGGCAAAGAAGAGAGAGAAATCAGGCTGCAGATGGCAGAAAAGGCCAAATCAGGGGACCTGAAAGCAGTTAATGGCTCTGCGGCGTCTCAGGCTGCTGCCACCAAACGCAAGCGTCGTTGGGACCAGACTGCTGACCAGACCCCAAGTGCTACACCAAAAAAAGTGTCCAGCTGGGATCAGGCAGATTCTGCAGCAGAAACTCCAGGACACACACCTGGGCACACACCTTCCAACAGCCGCTGGGATGAAACTCCCGGTCGCCCTAAAGGAAGCGAGACTCCAGGAGCAACACCGAGCTCCCGTATGTGGGACCCCACCCCCAGCCACACCCCTGCTGGAGCTGCCACACCTGGTCGAGGTGACACCCCCGGGCATGCTACACCTGGCCACGGAGGAGCCACGTCCAGTGTGCGCAAGAACCGCTGGGATGAAACACCAAAAACAGAAAGAGAGACCCCTGGCCATGGCAGTGGCTGGGCTGAGACCCCTCGCACTGACAGGGGAGATGAATCGGTGGGTGAGACTCCAACCCCTGGAGCAAGCAAAAGAAAGTCAAGATGGGACGAGACTCCTGCCAGTCAGATGGGCTCCTCTACTCCTCTGCTCACTCCTGGAAAGACCCCTATCGGCACACCTGCGATGAATATGGCCACACCTACTCCAGGTCATCTGATGAGTATGACTCCTGAGCAGCTTCAGGCATGGCGCTGGGAGAGGGAGATTGATGAGAGGAACCGTCCACTGACTGACGAGGAGCTGGACGCCATGTTTCCTGAAGGCTACAAGGTGTTGCCTCCACCAGCAGGCTATGTACCAATCCGCACCCCTGCCCGTAAGTTAACGGCTACACCAACACCAATCGGGGGCATGACTGGCTTCCATATGCAGACCGAGGACCGAACCACGAAACAGATGAACGACCAGCCGTCTGGCAACCTTCCGTTCCTGAAGCCAGATGACATCCAGTACTTTGACAAACTTCTGGTGGAGGTGGATGAGTCGACTCTAAGCCCAGAAGAGCAGAAAGAGCGCAAGATCATGAAGCTGCTCCTGAAGATCAAAAACGGCACCCCTCCAATGAGAAAGGCTGCTCTCAGACAAATCACAGACAAAGCCAGGGAATTCGGAGCTGGGCCACTCTTTAATCAGATCCTACCTCTGCTCATGTCTCCTACACTCGAAGACCAGGAGCGCCATCTGTTGGTGAAGGTTATCGACCGCATCCTCTACAAACTGGACGACTTGGTTCGTCCCTATGTCCACAAGATTCTTGTGGTGATCGAGCCCTTGCTGATTGATGAGGATTATTATGCTAGAGTGGAGGGCAGAGAGATTATTTCCAACTTGGCAAAGGCTGCTGGTCTGGCCACGATGATCTCCACAATGAGGCCTGATATCGACAACATGGACGAGTACGTGAGAAACACGACAGCTCGTGCCTTTGCTGTCGTAGCTTCTGCTTTGGGCATTCCTTCACTCTTGCCTTTCCTAAAGGCTGTGTGCAAAAGCAAGAAGTCCTGGCAGGCTCGGCACACAGGCATCAAGATTGTGCAGCAGATCGCTATTCTCATGGGCTGCGCCATCCTGCCCCATCTCCGCAGCTTGGTGGAGATTATTGAACATGGTCTTGTGGATGAACAGCAGAAGGTGCGAACCATCAGTGCTTTGGCTATTGCTGCTCTTGCAGAGGCTGCCACGCCCTACGGTATCGAGTCTTTTGACTCTGTGCTAAAGCCCCTTTGGAAGGGTATCCGACAACACAGAGGAAAGGGTCTGGCTGCCTTCTTAAAAGCTATTGGATACTTGATTCCACTTATGGATGCTGAGTATGCCAACTACTACACAAGGGAAGTGATGCTTATCCTCATCAGAGAGTTCCAGTCTCCAGATGAGGAAATGAAGAAGATTGTGCTGAAGGTGGTGAAGCAGTGTTGTGGCACAGATGGTGTGGAGGCCAACTACATCAAAACCGAGATCCTGCCCCCTTTCTTTAAGCACTTCTGGCAGCACCGTATGGCCTTGGACAGACGCAATTACAGACAGTTGGTGGACACTACAGTAGAGCTGGCTAACAAAGTCGGAGCAGCGGAAATCATTTCGCGCATCGTGGACGACTTGAAGGATGAAGCTGAGCAGTACAGAAAGATGGTGATGGAGACCATTGAGAAAATCATGGGCAATCTGGGTGCAGCAGACATTGACCACAAACTGGAGGAGCAGCTTATTGATGGCATCTTGTACGCCTTCCAGGAACAGACCACGGAGGACTCTGTGATGCTGAATGGTTTTGGCACAGTGGTGAATGCTCTGGGCAAGCGAGTGAAGCCTTACCTGCCTCAGATCTGCGGTACAGTTCTGTGGCGTCTCAATAACAAGTCTGCTAAAGTCCGTCAGCAGGCTGCTGACCTCATCTCCCGCACAGCCGTAGTTATGAAGACCTGTCAGGAGGAAAAACTGATGGGGCATTTGGGCGTTGTACTGTACGAGTATTTGGGAGAAGAATACCCGGAAGTGCTCGGAAGCATCCTCGGAGCCCTTAAAGCTATTGTTAACGTGATCGGTATGCACAAAATGACGCCGCCAATCAAAGACCTGCTTCCTCGGTTAACGCCAATCCTAAAGAACAGGCACGAGAAAGTACAGGAGAACTGTATTGATCTTGTGGGCAGAATTGCTGACAGGGGTGCAGAGTATGTGTCTGCCAGGGAGTGGATGCGAATCTGTTTTGAGCTGCTAGAGTTGCTAAAAGCTCATAAGAAGGCCATCCGGAGAGCCACTGTAAACACTTTTGGCTATATTGCGAAGGCAATTGgGCCTCACGATGTGCTTGCTACACTACTCAACAACTTAAAAGTGCAGGAACGGCAGAACCGTGTGTGTACAACAGTCGCCATTGCCATTGTGGCAGAGACGTGTTCACCGTTCACGGTTCTTCCGGCACTGATGAATGAATACCGTGTCCCAGAGCTCAACGTTCAGAACGGTGTTCTCAAGTCCCTCTCCTTCTTATTTGAATATATTGGTGAAATGGGAAAGGACTATATCTATGCCGTCACGCCGTTATTGGAGGATGCACTGATGGACAGAGACCTTGTGCATAGGCAGACGGCGAGCGCTGTAGTGCAGCACATGTCCCTGGGTGTGTATGGATTTGGCTGTGAGGACTCTCTGAACCACTTACTCAACTACGTTTGGCCTAACGTCTTTGAGACGTCGCCTCACGTTATTCAGGCTGTGATGGGAGCTCTGGAGGGTCTCCGCGTGGCTATCGGGCCGTGCCGTATGCTGCAGTACTGCTTACAGGGTTTGTTCCATCCTGCGCGGAAGGTACGTGATGTCTACTGGAAGATCTATAATTCCATCTACATCGGCTCCCAGGATGCGTTGATTGCACATTATCCCCTCGTCTACAACGATGAGAAGAATCCCTTCGTCCGCTATGAGCTGGAGTACTTCTTATAAATACCTGTACACACCTTTTTCATGTACACTCTTTCGTTTCCCTGCATCTTTGTCTCCCATAAGCCATGATTTGTAGAAATAAGTCATACTATTTTTAGTTCTGTTGTTTTGCAGCTACATTCATCACACATGCTGAGGTCagaataatttttaataaacaactgAAAGTGGGAAAAGCGTGAAACGTATAAGaactttattattttggttTTTAAAAAACACCTAACTATTGGCAGTGAAACGTAGTGGCACATTCACTAAAATGTGAAGCCTTTAGCAGGAATGTCTGGACAAATTGTAAAGTTGTGATTTTCCTGTAGCGATCTGTCCTGCTTCTTTTCATCATCCCTCATCAGTTCTTATTTGGATGTTGCTTACTTTGGCTGAATAAACATTTGTGTATTAAAAGTCAA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0014032 neural crest cell development biological_process
GO:0030318 melanocyte differentiation biological_process

KEGG:

id description
K12828 SF3B1, SAP155; splicing factor 3B subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232794 lncRNA downstream 45093 34835057 ~ 34835412 (-) True G171995
TU232848 lncRNA downstream 46129 34833723 ~ 34834376 (-) True G172027
TU232837 lncRNA downstream 60864 34813266 ~ 34819641 (-) True G172019
TU232809 lncRNA downstream 94612 34785639 ~ 34785893 (-) True G172007
TU232792 lncRNA downstream 213675 34642717 ~ 34666830 (-) True G171994
TU232854 lncRNA upstream 6425 34898209 ~ 34908956 (-) True G172032
TU232858 lncRNA upstream 30417 34922201 ~ 34924365 (-) True G172034
TU232861 lncRNA upstream 34339 34926123 ~ 34928686 (-) True G172037
TU232857 lncRNA upstream 41228 34933012 ~ 34935792 (-) False rftn2
TU232867 lncRNA upstream 54975 34946759 ~ 34983917 (-) True G172040
XM_022680638.1 mRNA downstream 1856 34840375 ~ 34878649 (-) False ankrd44
XM_022680637.1 mRNA downstream 1856 34840375 ~ 34878649 (-) True ankrd44
XM_022680639.1 mRNA downstream 1856 34840674 ~ 34878649 (-) False ankrd44
XM_022680635.1 mRNA downstream 58716 34819096 ~ 34821789 (-) True LOC111194949
XM_022680634.1 mRNA downstream 64586 34813427 ~ 34815919 (-) True LOC111194948
XM_007227764.3 mRNA upstream 18377 34910161 ~ 34920697 (-) True hspd1
XM_022680009.1 mRNA upstream 42404 34934188 ~ 34959753 (-) True rftn2
XM_007227761.3 mRNA upstream 289742 35181526 ~ 35251536 (-) False satb2
XM_015603402.2 mRNA upstream 289742 35181526 ~ 35251536 (-) False satb2
XM_007227759.3 mRNA upstream 289742 35181526 ~ 35251535 (-) True satb2
XR_002651393.1 other downstream 1644627 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 1704221 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 2108373 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 2976978 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 6192826 28686050 ~ 28687679 (-) True G170854
TU232866 other upstream 45521 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 329931 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 478659 35370443 ~ 35371387 (-) False olig2

Expression Profile