RNA id: XM_022680638.1


Basic Information

Item Value
RNA id XM_022680638.1
length 3877
RNA type mRNA
GC content 0.57
exon number 28
gene id ankrd44
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 34840375 ~ 34878649 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcgtgtgttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgagctGAACACACCCGAAGTGTGAGCTGAGTGTGccctgatgctgctgctgtaaaTGCGGATTAATTCCGGCATCGCCCGCCTCCATCCCTCCAGCCCCGGCTCGTCTCCAGCTGCAGCGGCTCGCCCCGCTCTCGCTGGACGAAGATAGCGCCCGTGGAGCGGCCATCTAGCCCCCGGGGCCGCGAGCTGAAGCAGAGCCTAGCGGTTACCGCTGCTGTaccgccgccgctgctgctggaTACTGCGGGTCTCTCTGCTGCACTGAGCGGAGCGGAggatcagcagctgctcctttctttcattctttcttttcttcctcttcttttcctCCAAATCTCCAGCCTTCACACTCAGGGCTCGGGGGAGGCTCGGATGTACCGGTTCAGGTGACCCTCGATATGGCTGTTCTGAAGCTCGTCGATCAGccgcctcttcttCAGGCCATCTTCAATGGAGACCCTGAGGAGATACGCATGCTCATCTTCAAATCCGAGGACATCAATGCGCTGGATGCAGAAAAGCGTACTCCCCTCCACGCTGCAGCGTTTCTGGGGGATGCTGAGATTATTGAGCTGCTCATCCTCTCTGGGGCTCGGGTCAATGCCAAAGACAACATGTGGCTCACCCCTCTGCACAGGGCTGTGGCTTCCAGGAGTGAGGAGGCGGTGCGTGTGCTGATCCGTCACTCGGCCGACGTGAACGCTCGTGATAAGAACTGGCAGACTCCTCTGCACGTGGCGGCGGCTAACAAAGCTCTGCGCTGCGCTGAGGTCATCATCCCGCTCCTCAGCAGTGTGAACGTCTCGGACCGCGGGGGACGCACTGCTCTGCACCATGCTGCCCTCAACGGACACACTGAGATGGTCAGTTTGCTGCTGTCTAAAGGTGCTAACATCAATGCCTTTGATAAAAAGGATGGCCGTGCTCTCCACTGGGCTGCCTATATGGGCCACTTAGACGTGGTGTGTCTGCTGGTGGACCAGGGAGCAGAAGTCAGTTGTAAAGACAAGCGAGGATACACACCTCTCCATGCTGCCGCCTCCAACGGACAGATCAACGTCGTCAAACACCTGCTCAACCTGTCCGTGGAGATAGATGAGGCCAATGCGTTTGGGAACACCGCTCTGCACGTGGCCTGTTTTAATGGTCAGGATGCAGTGGTCAGTGAGCTGATTGACTACGGGGCCAATGTGAGTCAGCCCAACAACAAGGGCTTCACTCCTCTCCACTTTGCTGCTGCGTCCACTCACGGAGCACTCTGCCTGGAGTTCCTGGTCAACAACGGAGCTGACGTCAACGTGCAGaGTCGGGATGGGAAGAGTCCTCTCCATATGACCGCAGTGCACGGACGCTTCACACGCTCACAGACTCTCATCCAGAACGGTGGAGAGATTGACTCTGTTGATAAGGATGGAAACACTCCGTTACACATCGCCGCTCGTTATGGTCATGAGCTCCTCATTAACACCTTAATCACCAGTGGAGCCGACTGcaccaggAGAGGAGTTCATGGAATGTTCCCGCTGCACTTGGCTGCTCTGAATGCTCATGCTGACTGCTGCCGGAAGCTTCTCTCCTCAGGCTTCCAGATCGACACCCCGGACAGCCTGGGGCGGACCTGTCTGCACGCCGCCGCTGCTGGAGGAAATGTGGAGTGTGTGAAGCTGCTGCTCAGCAGTGGATCAGATCACAACCGGACGGATAAACACGGCAGGACTCCTCTCCACTATGCAGCTGCCAGTCGTCATTTTCAGTGCCTGGAGACTCTGGTGTCCTGCGGTACCTGCATTAATGCCACTGACCAGTGGGGGCGCTCTGCCCTGCACTATGCTGCTGCCTCTGACCTGGACAGAAGGCGACGTGTAGCCCTGGAGCCGGAGAGTCCTGGAGTGCAGGcggagaaggagaaagaggcAGCTCTgtgccTTGAGTTCCTGCTGAAGAGTGGAGCCACTGCCTCACTGAAGGACAAGCAGGGCTATAGTGCTGTTCACTATGCTGCTGCCTATGGCCACAGACACTGCCTGGAGCTGCTCTTGGAAAGAGAGGAGAACCATCAGGATGAGATGGAGAGTTCCAGCACTAGGAGTCCCCTTCATCTAGCCGCGTATCATGGTCATGCCCAGGCTCTGGAGGTCTTGCTGCAGGGTCACTGTGAGGTGGATCAGGGGGATGAGGTGGGCCGCACTGCTCTGGCCCTGGCTGCCCTCAGGGGCCACACTGACTGTGCCCTGACCCTGCTGAACCACGGGGCCTCGCCACGCAGCAGAGACTCCGGCCGAGGGCGCACTCCCATCCACCTCGCAGtGATGAACGGTCATACGTCGTGTGTGCGCCTCCTGCTGGAGGACTCTGACTGTGCAGACCTGGTGGAAGCAGCTGATTCTCAGGGACAgACCCCCCTGATGCTGGCGGTGGTGGGGGGTCATGTGGATGCTGTATCTCTGCTGCTGGAGCGAGAGGCCAGTGTGGACACAGCTGACCATCAGGGACTGACCGCCCTTCACTTAGGAtTGCTGTGTGGGCAGGaggagtgtgtgcagtgtttgcTGGAGCAGGAAGCCTCAGTGTTGCTGGGGGACTCTAAGGGCCGCACAGCTCTTCACCTGGCTGCAGCGAGGGGCCACGCGTCCTGGCTGAGTGAACTGCTGAGTATAGCCTGTTCTGAGCCCCCGACGCCTCCACTACGAGATAACCAGGGCTACACACCCCTACACTGGGCCTGCTATAACGgtCACGAGGGCTGTGTGGAGGTTCTACTAGAACAGAAAGGCTGCAGATGTTTCGATGGAAACCCCTTCACCCCTCTGCACTGTGCTGTAGTGAATGATCACGAGTCCTGTGCCACGCTTCTGCTGGAAGCCATGGGCTCAGAGATAGTGACCTGTAAGGACTCCAGGGACAGGGCGCCTCTTCATGCCGCTGCGTTTGCCGGCAATGTGGACTGTGTTCAGCTGCTCTTGGCCCATGATGCTCCTGTGGATGCTGTGGACCAATCAGGGCGCAGTGCGCTCATGATGGCAGCTGAGAGAGGAGCAGTCGGAGTTGTAGAGGCTCTTCTCACCAGCGCCAGCGCAGACCTGAGTCTCACAGACCAAAAAGGAAACACTGCTCTACACCTCGCTTGCAGTAAAGGAAAGGAGGACTGTGCTTTGTTAATTTTGGAGAAACTTCCAGATACCACAATAGTAAAGGCCACAAATTCTGCACTCCAGACtcctCTCCACCTGGCTGCGCACAGTGGTCTGAAGCAGACGGTGAAGGAGCTGCTGTCCCGCGGTGCCAGTGTGCAGGTTCTGGACGAGAACGGTTTCACTCCCGCTCTGGCTTGTGCTCCTAGCAAAGAAGTGGCAAACTGCCTGGCTCTCATTCTGGCTACCATGATGCCTTTCTGCTCCCCTTGCAGCTCTGGAGCGCCCTCCCCAGGGGCCCTGTTGAGGTCCCTGCCCCGACAAGCCCCCAAAGGCTCCCAGGGGCCACGGGGCCCTTCCAGCGAGGGCACCACCACGGAAAACGACTCAGATTCGGAGACCTTTTGACCTCCGCCTTCTCTGGAGCCCTTCCTGTACAAGTTCTCAAAGCACTTAGCCTAGCGAACCTCACAGCAACTGTACAGAACCTCCTCTGAGTCCCTGTACAGAACGGAGATCTTATATAAgagattatattattattataacacgTGAAGTCTCGTTTATGCTTCTCGCAACTACTCGGGTATAAAGCCTCTTGCATATCGGCACTGtccaacaaaaaataatatatatataagaaataaaacaagtatctctaaaacagcgacatctaaactttcaattgaagtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232794 lncRNA downstream 4963 34835057 ~ 34835412 (-) True G171995
TU232848 lncRNA downstream 5999 34833723 ~ 34834376 (-) True G172027
TU232837 lncRNA downstream 20734 34813266 ~ 34819641 (-) True G172019
TU232809 lncRNA downstream 54482 34785639 ~ 34785893 (-) True G172007
TU232792 lncRNA downstream 173545 34642717 ~ 34666830 (-) True G171994
TU232854 lncRNA upstream 19560 34898209 ~ 34908956 (-) True G172032
TU232858 lncRNA upstream 43552 34922201 ~ 34924365 (-) True G172034
TU232861 lncRNA upstream 47474 34926123 ~ 34928686 (-) True G172037
TU232857 lncRNA upstream 54363 34933012 ~ 34935792 (-) False rftn2
TU232867 lncRNA upstream 68110 34946759 ~ 34983917 (-) True G172040
XM_022680635.1 mRNA downstream 18586 34819096 ~ 34821789 (-) True LOC111194949
XM_022680634.1 mRNA downstream 24456 34813427 ~ 34815919 (-) True LOC111194948
XM_022680632.1 mRNA downstream 80798 34550426 ~ 34759577 (-) False fgf14
XM_022680633.1 mRNA downstream 111435 34550426 ~ 34728940 (-) False fgf14
XM_022680631.1 mRNA downstream 213677 34550426 ~ 34626698 (-) True fgf14
XM_007227766.3 mRNA upstream 1856 34880505 ~ 34896210 (-) False sf3b1
XM_007227767.2 mRNA upstream 1856 34880505 ~ 34891784 (-) True sf3b1
XM_007227769.3 mRNA upstream 12204 34890853 ~ 34896212 (-) False sf3b1
XM_022680640.1 mRNA upstream 12552 34891201 ~ 34896212 (-) False sf3b1
XM_007227768.3 mRNA upstream 12552 34891201 ~ 34896212 (-) False sf3b1
XR_002651393.1 other downstream 1604497 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 1664091 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 2068243 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 2936848 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 6152696 28686050 ~ 28687679 (-) True G170854
TU232866 other upstream 58656 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 343066 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 491794 35370443 ~ 35371387 (-) False olig2

Expression Profile