RNA id: XM_022680633.1


Basic Information

Item Value
RNA id XM_022680633.1
length 1969
RNA type mRNA
GC content 0.48
exon number 5
gene id fgf14
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 34550426 ~ 34759577 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGTCCAGGCCTGTGACAACCAAACCAGCAACAATAGAACGTGTGCTTAAGCACTTGACATTTCTGGGAGGCTATCATTATCCAGTAGCGCACTGGCGCTCGCCGAAGGGCACCGGCGCTGCTGTAAGAGGTGGGCTTTTCAAGAGGCTCTGAAGGGCTTCTTAAGGGTGGCCAAGCTCTGAGAGCTGGCAGTCCAGCGCCCGTGGTGGAGGTTAGCGGGGAGGGTCCATGAAAAAGGTCGGACTATGGAGCACACTGGCTTCGTAAAGATTGTAGAGCGGCATTTACGCACCGCAATCAAAAACACTGACCGAGAGGATCCCCAGCTCAAGGGTATAGTGACCAGGTTATATTGCAGGCAGGGATACTACTTGCAAATGAACCCAGATGGATCTCTTGATGGGACCAAGGATGACAGCAGTAATTCCTCATTGTTCAATCTCATCCCTGTGGGCCTCCGAGTTGTTGCTATTCAGTCCGTGAAGACAGGGTTATACATCGCCATGAATGGGGAAGGCCATCTGTACACATCAGAACTCTTTACGGCGGAGTGCAAGTTTAAAGAGTCTGTATTTGAGAACTACTACGTGATCTACTCGTCCATGTTGTACAGACAGCAGGAGTCAGGGAGAGCCTGGTTTCTGGGCCTCAATAAAGAGGGCCAGGCCATGAAGGGCAACCGTGTGAAGAAAACCAAACCAGCTGCTCACTTCCTGCCCAAGCCATTAGAAGTCGCGATGTACCGGGAGCCATCGTTGCACGACGTCGGGGAGTCAGTGCCCAAGGCCGCCGTGCCTCCGAGTAAAAGCACAAACGAGCCGGCCGTGATGAACGGAGGCAAACCAGTCAGCAAGCCCGCCAGCAAGCCCAGCACATAGCCCGGCCGCGGAGACCACGCCAGAGACCCCCCTGCCCccggagagagagcgagactcTCCCTGTCTCGTCTGTGGATCCGGTCCAGACGAGcccctcttctcctcctccagctcctcctcttccttctccttcttcctcttccttcttcctcttcttctccagcgcctcctcctccttctcctcctcctctgacTCTTTTCCTCCACTCGGCAGATCGATCGCAGAAGCCGCGGCCAAGAGTAGCGCTGAGGAGGAGGATCCGACCGGACGCAGCGGCGGATCAACCCGCAACCatggaatgaatgaataaataaatgaatgaataaatgctctacCGGATACGGAATGCCTTTTTTCCTGCTTCCCTAGAAAACACAATAAACTCCCACcctctattttatttttgttccttATGACTGTGACAATCTATGAAAGACTGAAAGACTTTAAGACTGAAAGACTGAAGGACTGAGAGGGACAGCAGCTGCAGGTGCATCGTGTGATGACGTCTCTatccttcttcttcttattctcCTTCTTATAATTACTATAattcttattttgtcttttttttttttagttgtttgtgttttttggagcCCTGTGATGGCGGTGTCTATTTCAGATCTATTTTCTATACACAGTGAACACCAGCTACGCTCTGGGGAAATAATGCGCATTGACTACAGACGGACTTCTGCGAGAAACTGCAAGAAAAACACAGGACTGTCGTCGCTGTCCTCAGATTTTTTTATAGGGTCTGTTTCTCCTCCAGTGTCTCCTGCTCGATCTTATCAagctttctcttctctctctgtgtgtctctgtctctatcgTTCTTTCTcattcctttttgttttttcgtCGAGTTGTTCTACAGCACTACAGCAGGGGatatgtgtgatttttttatttattcatttatttattttttagttaatttggttCGTCTCTTTCCTTTTTCTACTACTTTCtactactttcactttcattttgCATTTTGAGTGCACACATCTTAACAGTTCTTTTGGTGCACCCCTAcacttatatatacatatatatatatatatatatatatagtatatatata

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232767 lncRNA downstream 56 34471788 ~ 34550370 (-) True G171979
TU232733 lncRNA downstream 290679 34255406 ~ 34259747 (-) True tmtc4
TU232732 lncRNA downstream 292469 34255406 ~ 34257957 (-) False tmtc4
TU232470 lncRNA downstream 382780 34167387 ~ 34167646 (-) True G171768
TU232433 lncRNA downstream 486931 34063152 ~ 34063495 (-) True G171732
TU232809 lncRNA upstream 56699 34785639 ~ 34785893 (-) True G172007
TU232837 lncRNA upstream 84326 34813266 ~ 34819641 (-) True G172019
TU232848 lncRNA upstream 104783 34833723 ~ 34834376 (-) True G172027
TU232794 lncRNA upstream 106117 34835057 ~ 34835412 (-) True G171995
TU232854 lncRNA upstream 169269 34898209 ~ 34908956 (-) True G172032
XM_022680007.1 mRNA downstream 105187 34323173 ~ 34445239 (-) True nalcn
XM_022680006.1 mRNA downstream 276637 34255377 ~ 34273789 (-) False tmtc4
XM_007227775.3 mRNA downstream 523588 34021969 ~ 34026838 (-) True zic5
XM_007227778.3 mRNA downstream 675121 33870988 ~ 33875305 (-) True LOC103047371
XM_015603986.2 mRNA downstream 708811 33838702 ~ 33841615 (-) True gpr183
XM_022680634.1 mRNA upstream 84487 34813427 ~ 34815919 (-) True LOC111194948
XM_022680635.1 mRNA upstream 90156 34819096 ~ 34821789 (-) True LOC111194949
XM_022680638.1 mRNA upstream 111435 34840375 ~ 34878649 (-) False ankrd44
XM_022680637.1 mRNA upstream 111435 34840375 ~ 34878649 (-) True ankrd44
XM_022680639.1 mRNA upstream 111734 34840674 ~ 34878649 (-) False ankrd44
XR_002651393.1 other downstream 1314548 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 1374142 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 1778294 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 2646899 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 5862747 28686050 ~ 28687679 (-) True G170854
TU232866 other upstream 208365 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 492775 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 641503 35370443 ~ 35371387 (-) False olig2

Expression Profile