RNA id: TU232732


Basic Information

Item Value
RNA id TU232732
length 2122
lncRNA type sense_over
GC content 0.40
exon number 3
gene id tmtc4
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 34255377 ~ 34273789 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgtgaGCTCTCAATCTAAAAATGGTCTTGTATGTTTGGTATTGGGATCTAATTCAAAGTATCAGTATTGAAAAATTTGAAAGATTTTCAAATGATACCCAGCCCCGAACATGATTAGACCGGAAGAGCAGGAATCAGCAATGCTTGAAATTTATGTATTAAAAGCtttgtgtgttgttttaaaGCCGGTCTTCCCCTGCCGTGTGGAGAATGCCCCGATTCCAAGACAGAAACTCTTTAAGCAGACACTTCTCCCGGCCAGGTTGCTGCTCCCCGGAGTGTCTTGGCATGCTGCATTTTCACTGCcaaaaaaagcacacaaaaaaaaaaaaatcttggcaCCAGTAACTTCTCCCTCAGCCTCATCTTGTCCCAAGACCGCTCAAAGTAAATTACCAAAAAATTGGAAATGAATTTCTTCCGTCCTTGTTTGCCTCTGGAGGATGGCTGGGAGACGTAGTGGCGGGCGGGGCGCGGGGCTTGAGTCATGTTCAGACTCCCGCGGCCGAGGAGAATCTCTGCTGCTCATGAATTAGATAAGGGCCGGCCAGGATGATGGGACCTCTCTGACTCTGTGGTCAAAGCGAGTTTTGACACCCGAATCAATAAGTCAGCAGCCCTTGTGTTGAACCCTAATTAGGAAACTAAAGCACTCGACCGTGTGCTGAGAGGAAAAACTCGTGTGGACACTGCTGACAAATGAGCCGCTGATCCGTATGTGTAAAGAAGGCTGCTGCTACAAAACAACCagctttttgttcttttttttaaaagtaaaacacttttttgttagcATGCCTGtgtcattgtttgtttttatattgatCTTTAGTTATGTCATTTGATATCTCTCATAggatcattttaaaaaaaaggacaacaaaaaatattaatctttatatgtttaattatacCACACttgttctgaccctgcaatgtaattagctgagaggcgttctaagagtgccattatcagccggtaatgcactgtaaccaaagctcctCCAagtacagctaaaaaaaaataaaataaaaagagagaccactaaaaatgagtttctttgattttaccaaatttcgTAAGATAGACGATCACAACCCATCAAgcctgcttgaacttttgcaccaggagtaaaggcacaaagttatccaaaagcagtgtgcaagactggtggaggagaacatgatgccaagatgcatgaaaacagtgattaaaaagatggatgatcacaagccctaAAACCAAGCTAacctgcttgattttttgccccaggagtattggcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatggaaactgtgattaaaaaccaatcagggttattcccccaaatattgatttctaaacttttttttgttgtttcagccatttctcattttttttgcaaataaatgctctaaataacgatatttttatttggaatttgggagaaatattttccgtagtttatagaataaaacaacatgttcattttactcaaacataaacctataaatagcaaaatctaaaGAAAAACTGGTCTTTTAATTTCTTCTAGAGCTATATATACTAATTTGTAATCATCgtcatgtaattaaaaaaaaaaagtgcaataatataagaatgtatttcaaatgttgGCCCttttataagtgttttttttaagcgttTGTGTAATTGCAGGCAACCTGGCTCAAGCAGAGTTAATAGGAAAAGAGGCCTTGAAGATATTACCTAAAGACCACACCATCATGTTCTCTTTAGCCAACGTGCTGGGAAAACAGCAGAAATACAAGGAGTCGGAAGGTTTTTTTCTAAATGCACTGAAGATCAACCCCAATGCTGCCAGTTGCCATGGCAATCTCGCTGTTCTGTACCACCGCTGGGGGAAGCTGGACTTGGCTAAGAAGCATTATGAACTCTCTTTAAAACTAGACCCCAAAGCTCCAGGGACCAATGAGAACTACAACATGCTGAAACGCAAGCTTGAGCAGCGGCAGAGGACAGCTGGATAATACAGCTTTTTTGATATTCCAGACGCGTGCCATGAATTCCACCTTTGTATGATGTTCACATTGAGAAAACGTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232470 lncRNA downstream 87760 34167387 ~ 34167646 (-) True G171768
TU232433 lncRNA downstream 191911 34063152 ~ 34063495 (-) True G171732
TU232414 lncRNA downstream 250534 34004364 ~ 34004872 (-) False G171716
TU232412 lncRNA downstream 251227 34002667 ~ 34004179 (-) True G171716
XR_002651398.1 lncRNA downstream 349370 33901546 ~ 33906036 (-) True LOC111194945
TU232767 lncRNA upstream 213831 34471788 ~ 34550370 (-) True G171979
TU232779 lncRNA upstream 228338 34486295 ~ 34579819 (-) True G171982
TU232772 lncRNA upstream 287414 34545371 ~ 34560383 (-) False G171979
TU232790 lncRNA upstream 355751 34613708 ~ 34614549 (-) True G171992
TU232792 lncRNA upstream 384760 34642717 ~ 34666830 (-) True G171994
XM_007227775.3 mRNA downstream 228568 34021969 ~ 34026838 (-) True zic5
XM_007227778.3 mRNA downstream 380101 33870988 ~ 33875305 (-) True LOC103047371
XM_015603986.2 mRNA downstream 413791 33838702 ~ 33841615 (-) True gpr183
XM_007227780.2 mRNA downstream 432352 33820164 ~ 33823054 (-) True gpr18
XM_007227782.3 mRNA downstream 711552 33536024 ~ 33543854 (-) False klf5
XM_022680007.1 mRNA upstream 65216 34323173 ~ 34445239 (-) True nalcn
XM_022680632.1 mRNA upstream 292469 34550426 ~ 34759577 (-) False fgf14
XM_022680633.1 mRNA upstream 292469 34550426 ~ 34728940 (-) False fgf14
XM_022680631.1 mRNA upstream 292469 34550426 ~ 34626698 (-) True fgf14
XM_022680634.1 mRNA upstream 555470 34813427 ~ 34815919 (-) True LOC111194948
XR_002651393.1 other downstream 1019528 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 1079122 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 1483274 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 2351879 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 5567727 28686050 ~ 28687679 (-) True G170854
TU232866 other upstream 679348 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 963758 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 1112486 35370443 ~ 35371387 (-) False olig2

Expression Profile