RNA id: XM_007227782.3


Basic Information

Item Value
RNA id XM_007227782.3
length 2680
RNA type mRNA
GC content 0.47
exon number 4
gene id klf5
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33536024 ~ 33543858 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acactctctcacacacacacacactctctcacacacacacagacagagagacagtctGCTCAGTGCTGGCTCTGTCCTGGGCAGCtgggagctgctgctgctgcgtggttattattattatggtccAGCTGTAGAGGAGAGCAGAGGGACGGACGGAGGGCGAGGAGGAGACGCGCAGTCGCCTTCAGGAGCGCCTGGGTTTAATGCCAGCCTCATCAAACCCCCAGACAGACTGTGATGGACAAATATCTGCCACCTCAGTTCCAGCCAGGCTCAGAGCCAAAGTTCAGCCAGGACAGCTTCCTGACGATGGAGCAAGGTTCTCCCTACAGCATCAACATGAACGTCTTCCTGCCTGATGTCACGTACCTCCGGACTGGACTCTGCCGGCCCGTGAGGCCCACGGCGCCGCAGATTAAGCCGGAACCACTGCAACCTCTCAGCTACTCAAGCTGCCACCATACTGTATCAGCAGCTCCTCCAGCCCCAGAATACACACACCTCTTCAGTACAGCTAATGCAACAGGCAGCAACAACACTTTCATCAAGCAGGAGACGCCGCCCATTGACTTTCAAGATGTTCCTTTATTTCAGCTTTTGAATTCAGACCTGGATCCCACAGTGTCTGGCACTTCCTCTTTCATGGAGCCTCACAGTAACATGTGCTCATCGTCGATGTCATCCTACAACAACGTGCACTCACCTGCTGCCCAGATTGCAGGACGGCCCATGTGTGACCAGGCCAGCAACGGGCCTTCTTCCTCCGGCCACTTTgggctgcatcagcagcagcagaaagcGGCCTACCTTCCACCCTCCCCTCCAAACTCAGAGCCGGGGAGCCCAGACAGGAGGAAAGAACTCATACACAACCTGTCACCACCGCCCTCCTACGCTGCCAGCATGGCATCTAAACTGGCAGGGCCAGCCTTGGGCCAtggagcagcggcagcagcagcagccctggCAGTACAAACACAAGCAATGGCTGCCAGGTACAACCGCAGGAACAATCCTGATCTAGACAAGAGGAGGATACATCACTGCGACGTCCCAGGGTGTAAGAAAGTCTACACCAAGTCCTCCCATCTGAAGGCCCACTTACGGACTCACACAGGAGAGAAGCCGTACAAATGCTCCTGGGAGGGTTGCGACTGGCGCTTCGCCCGTTCCGACGAGCTGACGCGCCACTTCAGGAAGCACACGGGGGCTAAGCCGTTCCAGTGTGCCGTGTGCAGCCGGAGCTTCTCTCGATCCGATCACCTGGCCCTGCACATGAAGAGACACCAGACTTAGATCTACAGCCACTGCCCAGCCCACTCAAGGCCCCAAGCTGCCCATTAAGGACCTCCCTGTTTACCCTGTGCATGTTTGTAGACACTGGTGTGTTGAGCACGCTTGGGTTTCGGCAGCTCACGAGGTGCATTGCATAGGCTCATAGGTGCTAAACGTGTTGGCGCTAGGCCTGTAGCCCCTGTGGAACGCAACAACAGCTCAGCTCTTTGATGCCAACCTAGCTGTGGATTTTGGTCATcgcctgttttttattttattagtatatatttgtctcatttctcattttcatgaCAAAAGTTTGAACTCTCAGCGTGCCTTTTCCATTTCTATTCAACCTAGAAGCTACTACAGATGCAAAGGTACCCTCCAATCCAAATTGCAACCATTGCACCTTACACTCTCCATTTCACATATGTCCTACTTTTTAAGCTCAATTAAGGTCAAACTGTGGATTAGTTCTCACCATGAATGTAGCAGCAAATCCCAAGGCCTAAGGCCtgttctcttctgttctgaaaaaaaaaacactctgagAAATGTCAAGCCTGAATACTTGAATAAGTAAAACAGGCATTTAGAGCCCTTATCGAAAGAACCAATCAGTTTAAAccagttaaaacacacacagacacacacactgtttcatTCATTGCTCTTATAATGAACCACTGGTTAAATAATGAAgtgttgtgaaaaaaaagtctCAGTTACCAAAGAAAGAATCTAAAAACTATCCATTCAAACGACGTAAAGAaggttttaaagtgtttttgtatttttgttttgtctccAAATCAAAGCACAATTCATAATTCACTAATAACAACATAGCAACCCTCATCTCTTCCAATGCAAACATTTAGATGCTGCATTTCATCTTTTAACACCTGTAAACAACTGACTTTGGGATATTTATGGAGGATCGGGATGAAATACTGTATGTggaacattttatttggaatatcaATAGCTTTAAGTGTACATATTGTAATTGCTTtagtctgtattatttatttttttgagatgggTTCTTTTCTACTCTATAAAATATTTCTCTATGCACATGTATGATGTGTATGGAGCTATGGGAACGGtggttttaattattaaaggaAATCTTATCTTTCAGATCAGCGAAGAAGTACATGGTTGCCTTTGGATAAGAGCCACAGCAGATAATGCTGGGGTTTGTAACTGTACGGCTTacagagtgtgttgtgtgtactgTAAGTGTGGTCTCATAAACTTTAATTTCCACTGCAGTAATCAAGTGTTTTTGGATTTCTTCCTTGAAAACAGTGTAGTAAattatttacaactaaaatgcACCACAGGTAAGGGTATGTCTGCCAAAGACTCTGCCAAATAAATCAGATTCGATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232310 lncRNA downstream 12130 33522201 ~ 33523894 (-) True G171627
TU232270 lncRNA downstream 100492 33435145 ~ 33435532 (-) True G171595
TU232262 lncRNA downstream 154155 33379357 ~ 33381869 (-) True G171587
TU232254 lncRNA downstream 166063 33364804 ~ 33369961 (-) True G171580
TU232243 lncRNA downstream 213054 33320685 ~ 33322970 (-) True G171573
XR_002651396.1 lncRNA upstream 55020 33598874 ~ 33616676 (-) False LOC103021721
XR_002651397.1 lncRNA upstream 62207 33606061 ~ 33618542 (-) True LOC103021721
XR_001518504.2 lncRNA upstream 62207 33606061 ~ 33616676 (-) False LOC103021721
XR_002651395.1 lncRNA upstream 62207 33606061 ~ 33616676 (-) False LOC103021721
TU232342 lncRNA upstream 246629 33790483 ~ 33791587 (-) True G171653
XM_007227783.3 mRNA downstream 3416 33526414 ~ 33532608 (-) True LOC103022452
XM_007227790.3 mRNA downstream 217673 33308869 ~ 33318351 (-) True LOC103024438
XM_022680616.1 mRNA downstream 239917 33282954 ~ 33296107 (-) True LOC103024754
XM_007227804.3 mRNA downstream 290372 33238965 ~ 33245652 (-) True LOC103027491
XM_007227807.3 mRNA downstream 300149 33214322 ~ 33235875 (-) False LOC103028031
XM_007227780.2 mRNA upstream 276310 33820164 ~ 33823054 (-) True gpr18
XM_015603986.2 mRNA upstream 294848 33838702 ~ 33841615 (-) True gpr183
XM_007227778.3 mRNA upstream 327134 33870988 ~ 33875305 (-) True LOC103047371
XM_007227775.3 mRNA upstream 478115 34021969 ~ 34026838 (-) True zic5
XM_022680006.1 mRNA upstream 711523 34255377 ~ 34273789 (-) False tmtc4
XR_002651393.1 other downstream 300146 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 359740 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 763892 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 1632497 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4848345 28686050 ~ 28687679 (-) True G170854
TU232866 other upstream 1393451 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 1677861 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 1826589 35370443 ~ 35371387 (-) False olig2

Expression Profile