RNA id: TU232243


Basic Information

Item Value
RNA id TU232243
length 784
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id G171573
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33320685 ~ 33322970 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtaataACAAAATCTATCCCAATGCAATAAAATACTGTCATATTGCTCACCCCTtaatataaaatagtttaaagtgGAATTTACAGTTCCACTTCGTTTTTTAAACCAGAACTCTCCATTTTATAAGAGTATTCTGAGGATATAACTCACCTGTCCAATGCTGGCCATGGCCTGGGCCTCCTGGTGAGCTTGTACAAAAGAAGCATTTTCAGTCCACAGCTGGTGCACCACCTGTAAAGCCGGTTTGGTCCATTTAGAGCTGGCCTCACCTAATCTAGTGATCAGGTGATCAGCAGTGAGTTTGCTCTTCGCAGCTGACCTAAAATGAAATGACAACAGCCTTATAACATCCTGGGCTGATTTCCAGTCAAGGTTTACTCCTGCTCTTTGAAATTTATTACAGTTTTCCACCAAGTCTACCGCACTGGTCTTTCCTTGAAGATGAAGCAGAATCTCATGACaTGTCTCCGAAAACACTTCTGATGGCAGCTTTCCAATGTTCCCGACCACAGCATCCACATCAGTCGACAGCtccattattatcattaatcaGATTTAGGGTTGTCTAACTCTCCTCTTCTCCGCTACAAAATCCAACACAGAAATCAAATCCCGATCCCAGACTGAGGCTTTTCAAGCGCTAAAATAAGCTGCAAGTGCTGTGGTCATTTCTACATGTTAAACTTTCGGTTATTTATCTAAAATAAggttaatatttgtattttactgCAGGTTTACAGCTCTACAAAAACACACCGAGCTACTACTTCCGCAAACGACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232241 lncRNA downstream 9723 33307993 ~ 33310962 (-) False LOC103024438
TU232239 lncRNA downstream 15225 33303167 ~ 33305460 (-) True G171569
TU232224 lncRNA downstream 140836 33179383 ~ 33179849 (-) True G171555
TU232223 lncRNA downstream 142360 33177919 ~ 33178325 (-) True G171554
TU232213 lncRNA downstream 192063 33127486 ~ 33128622 (-) True G171546
TU232254 lncRNA upstream 41834 33364804 ~ 33369961 (-) True G171580
TU232262 lncRNA upstream 56387 33379357 ~ 33381869 (-) True G171587
TU232270 lncRNA upstream 112175 33435145 ~ 33435532 (-) True G171595
TU232310 lncRNA upstream 199231 33522201 ~ 33523894 (-) True G171627
XR_002651396.1 lncRNA upstream 275904 33598874 ~ 33616676 (-) False LOC103021721
XM_007227790.3 mRNA downstream 2334 33308869 ~ 33318351 (-) True LOC103024438
XM_022680616.1 mRNA downstream 24578 33282954 ~ 33296107 (-) True LOC103024754
XM_007227804.3 mRNA downstream 75033 33238965 ~ 33245652 (-) True LOC103027491
XM_022680603.1 mRNA downstream 84809 33214322 ~ 33235876 (-) False LOC103028031
XM_007227783.3 mRNA upstream 203444 33526414 ~ 33532608 (-) True LOC103022452
XM_007227781.3 mRNA upstream 213054 33536024 ~ 33543858 (-) True klf5
XM_007227782.3 mRNA upstream 213054 33536024 ~ 33543854 (-) False klf5
XM_007227780.2 mRNA upstream 497194 33820164 ~ 33823054 (-) True gpr18
XM_015603986.2 mRNA upstream 515732 33838702 ~ 33841615 (-) True gpr183
XR_002651393.1 other downstream 84807 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 144401 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 548553 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 1417158 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4633006 28686050 ~ 28687679 (-) True G170854
TU232866 other upstream 1614335 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 1898745 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 2047473 35370443 ~ 35371387 (-) False olig2

Expression Profile