RNA id: XM_022680603.1


Basic Information

Item Value
RNA id XM_022680603.1
length 3298
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC103028031
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33214322 ~ 33235878 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAACACTGTCTGTGCCTGTGGACGGAGCGTGAGGGCAGAAGGGGGCAGAGGAAAGATGCAGTGGAGGAGCTACCTGTGAATTATTTCGCTTTTCTTCGGACAATGAGTGTTTTTCCTAGCTTTTGGATTCCTTTGGTGCTTTTTTTAGTGTTGAGCTGTGATGGTGTTCAGGTGACGGTAAAAGATGAGAGGAAGTTTGCCGTGCTGTTCGCGCCCGTGGTCCTGCAGTGCCAGTACAGCACCCACTCTACTCAGACTGCAGTTGTGCAGTGGTGGTATAAGTCATATTGTACAGACCGCACCCGCGATTCCTTCACCTTTCCAGAGAGTCTGGGGGTCCAGGGCTCTGAGCTGGGATCTACAGCCCACCTGGACTGTGCAGACAAGAGCCGCACTGTCCGCATCGTGGCCTCCGGTCAGGGAGCCTCCTTGACCCTGGCTGAACATTATAAAGGGAGAGATATCACCATTATCAACAAAGCAGACCTGCGCATTGGAGAGCTGCAGTGGGGTGACAGCGGCGTGTATTTCTGTAAGGTGGTCATCTCTGATGATCTGGAGGGGAAGAATGAAGGCCAAGTGGAGCTGCTGGTTCTGGGTAAGACAGGTGTGCTGGACGACGTCCTGCCTGAGTTTGAGCTGGAGATTATGCCAGagtggGTGTTTGTGGGGTCAGTAGTGCTGGGCAGTGTTTTGTTCCTGCTGCTGGTTGGGGTGTGCTGGTGTCAGTGCTGTCCtcactcctgctgctgttacctgcgctgctgctgctgtcctgATACCTGCTGCTGTCCTAAGCACTTGTATGAAGCTGGAAAGATGGCAAAGAGTGGACAGCCTCCACAGATCGCCATGTATTCTCCATATTACATTCCTGCCCCAGTGATTCCTCAAGCGGCACCATCTCTGATTGAACCCAAGATATCTACAGTGCCCCCCTCGGTGGAGAACAATATTGCTGCAGCAGCTGGCAGCCTATCAGAGCTGAGCTCACTGCATGATGGGGATATAGACTTCAGGCGAACCTATCGGCAGGTGCAGAAGAAAGCTCTGCCACCGATCAGTGACCACAACGATACACACCTCCGTACAGTGTCTACAGGTCACACACTCCGACCCACAATCTATCAGAGCAATTGCAATGAAGACCTACATGACAGCAGGTGGAACTGCCGCTCAGAGCACTTGCCCAGGAAGGCATTTGACAGCAGGGGCCGCACTTGCTCTCTGGATGAGTTGGAAGAATTTGCGAGGAGTTATGGGCCCCGCGCTGGTCGAAGGGGTGACCTCCGTGACCACGAGCGAGATATTGAAATGGAGCTCAGGTCCCGGGACTTCCGTCCCCCGTATCGGGACGGTCCGCGGCGATACCGCAgtgatgaggaggaggatgatgattGGCGGCGTTGCAGCCCCCCGTCCTCCCCTCAGAAGAGGCGAGACACCGGTGATAGCGAGCGTTATGCTGCTCGTAGACAGTCGTATGATGACGCCTACCTGACCTCTGTTCTGGAGCGGAAAGCCAGAGGGCGAGGGGAAAGGGGTGGACGGGCCGATGAGGACAGTGACACACCCTCAAAGGGCAGCTCCAAGAAGAGCAGTGACTGTTACTACAGCCGTTCACCAAGTAACCGCCCTGACGAGGATGACCCTCTGCCCCCGTACTGCGAGGTGGAGCGTTATCGAACTGAGAAGCCCGCAGAACGGGAGCGCTACAGGACGGTGGATGCTGGGGCACGGCCTTTCTCTTACACTCGTCCTGGTCAAACTATGTCCCACACTCTGCAGGAGCGCAGAGAGGAGAGGGACAAGCCCAGGAAACTGACCAGTCATCTAAGCAGAGAATCCCTCATTGTTTGAAGTCACCCAACAGCCTCAGAGTGTCTGCCATGCTGATCAGACTGGACTCACATCGTATTGTTAACAATCTGCAGcactatacaggaacacacctcattaaataataaagacaCTCGTGCTGGGTGCTCGTTATAAAGAGATATTTCATTCATacactgtgttttatgtgtgtgtgtgtgtgtgtgtgtgtgtttgagtcaACTACTGCATCTTCAGCTCATCTGTGTTCTTGCATccgtgtttgtgttttttaggtagaggtgggcgatataaTTGTGCATATTGCCTGTACTTTCACAACAGTGAAAAACGTTGTGCTCCCTTACAAAGAGCATAAATATTCCTTTTAAAGGTGCCCTAGAATGAAAAGcactgttttctttaaaaagaaaaatctgttataatgtaaatataatgtaaatgttgCATAACaatcttaataaataagtacctggattacatttttttaaatcatgattttgaaaatgattaatcacaaaatgtttttctgattaatacaattaatttttAAGAGCTTGACACTGCTAATTTGACACCACTTATTGCAATGCAATTCAAAGTTATGCAATTTCTGTGTGAGTTCCTGTGGTACCATAACTCAGCCAGTCAGAGCAGAGATAATCAATTTATTCATGATAATTTCACCATAAAAGGAAAATCAGCTTGTTTCTTTCAATGGCCAAAACCTATTGTTGTAAATGAGTATGTAAAACCATATCTTGGCAATTTCATCCCCAACCGAAGTCACAGACTTATGCCTGTTATCTATACATCAAAGAGCAGCttcaaatactgaataaatgcaTTCTATGGCACCTTTAAGATGAATATTGTGCAGCAAAGTGTGTAAAaccttcagtaaaaaaaataaacatggtaTTGTGATGCTATCATgttgccatattgcccaccctaCTGACAAGCCATCAGTTCACTCACTCATCTCTTCTGTGGAAAtatcagtgtttgtgttttacagacttttaatcactttttttttgcttaatgaaTAAGAATGTGTCAGATTTGGACTCAGGCGGCCTCAGTCTACAAGTGCACAAAACCATGTCAACTAAAAATGCCTCAAGACCTTGTGTTTTAATTCCATTGAAGAACCTTGAGCCTTGTGTTTGggttatgtactgtatgtatatactttttttgctctgttattcttttttaagtTTGCACTATAGATTATGTTTGTATTCAGTATTAATCAGTTGGTCTACACTGGCAGTTTTTAATGACTGTTTCCTTTGATAATGTGCCATGGATTATTCCACCTGTATAAAGTAATGATTTTCATTTTGATAAAAAACACTTGCTGTCTATTGAATGCTGAGTAATATTTGTTCAATTACTGAGACTGATAACAAGTGTGTACTCACGATAAAACACCATGCTTCTTATCTCA

Function

GO:

id name namespace
GO:0007492 endoderm development biological_process
GO:0031016 pancreas development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232224 lncRNA downstream 34473 33179383 ~ 33179849 (-) True G171555
TU232223 lncRNA downstream 35997 33177919 ~ 33178325 (-) True G171554
TU232213 lncRNA downstream 85700 33127486 ~ 33128622 (-) True G171546
TU232182 lncRNA downstream 114391 33023079 ~ 33099931 (-) True G171525
TU232179 lncRNA downstream 249085 32960604 ~ 32965237 (-) True G171523
TU232239 lncRNA upstream 67291 33303167 ~ 33305460 (-) True G171569
TU232241 lncRNA upstream 72117 33307993 ~ 33310962 (-) False LOC103024438
TU232243 lncRNA upstream 84809 33320685 ~ 33322970 (-) True G171573
TU232254 lncRNA upstream 128928 33364804 ~ 33369961 (-) True G171580
TU232262 lncRNA upstream 143481 33379357 ~ 33381869 (-) True G171587
XM_007227808.3 mRNA downstream 1825 33202309 ~ 33212497 (-) True LOC103028763
XM_022680602.1 mRNA downstream 13635 33191783 ~ 33200687 (-) True LOC103029083
XM_007227809.3 mRNA downstream 13636 33191783 ~ 33200686 (-) False LOC103029083
XM_007227819.3 mRNA downstream 44672 33137807 ~ 33169650 (-) False dcaf6
XM_007227804.3 mRNA upstream 3089 33238965 ~ 33245652 (-) True LOC103027491
XM_022680616.1 mRNA upstream 47078 33282954 ~ 33296107 (-) True LOC103024754
XM_007227790.3 mRNA upstream 72993 33308869 ~ 33318351 (-) True LOC103024438
XM_007227783.3 mRNA upstream 290538 33526414 ~ 33532608 (-) True LOC103022452
XM_007227781.3 mRNA upstream 300148 33536024 ~ 33543858 (-) True klf5
TU232221 other downstream 38038 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 442190 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 1310795 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4526643 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 5311423 27900794 ~ 27902899 (-) False LOC111194963
TU232866 other upstream 1701429 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 1985839 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 2134567 35370443 ~ 35371387 (-) False olig2

Expression Profile