RNA id: TU232241


Basic Information

Item Value
RNA id TU232241
length 2944
lncRNA type sense_over
GC content 0.37
exon number 2
gene id LOC103024438
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33307993 ~ 33318351 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAAATCAAACTCCATTCTTCCCTTTTATTTGTCATTACATTAAGAAATGGACACATTCtctattaaaacaataatgagAACTATTAGCAGTGGATTGCAACACatcattctcattttctgccccAAAGCAGGGACACAGCTGTCAGAGagaacacacagtaacacaccaGCAAAAGCAGATTATAACACTCCTTTCATATATTCAGTGCGTCCTTTGTAACAGTAACTCAATTTACATATTTGTCACCCCTCTCAGGCTGTAAAGTAGCGTTAAATGATACTTGTCCCTCTCAATGAATCAAAAATCAAACCAATCCTGCTTCATATTAGTGTATAACAAACCCTCATTTAGCACAATACAGAATCCAAAAACTTCTGTATAGTCCTGTAACCACTTATCCAATCATCATATCCCTCAGTGTGCACAAATCCATAACATGCTGGATGGGGGGTAAGCAGGTCTGATGATTAACATTAAGCTgcaaaaatgtatgtgtgtatttatgtatgtacgTATCAGAGTGTTTGTTATAAATgatcaatattaataaatacatttgtttgcAAACATCGGGTCGTACTGTAacaagtaaatattttatatatatttttttattaacagacAAGCTGACTCACATGCCAAATTCAAGTCAtaaggggtgggcaatatgatgaTTTGATCCTTTTTGAGATAAATCATGGCTTAGTGTGCATTTTTGAACATTGTCTAACTGCATAACTTATTATAAAGAAAGCGGAATTAcataaacattgaataaaaatcactgtaatcacatttttatgacaaaatgttttgtaaatgtACCATTAATGCACCAGGCTTTTTTCTCTGTTGTAGTTCAATAGCCctcaaattatataaaatattataacatattatattatgtgCATGTCCTAAAAAATGCCTTCCAGTATTATGATATTATATGTTTagaatatttagaatattttagactatattgcccacccctataaattactgagtgtgtttacatgcactttatAAATCCGATTACTGCTGATAACCTCACAGTTTACATAATGGGAAAACTCAAGAGTTTATGTGAGTCAGGCATAAAATAAACTCACAGAAAAAGAAGTATAACCCAATCTTCATGTGgcattttttctttccttttttttttttttaaacaaaatgagCCTCAATCTGAACATATATCAGAAAGAAGATCCATAGATTTCATTGACACTGTGGAGGTCTTTTGTCGCCATCTTGTGGTGGGTGCTGTGTTAAATGcagtttgcttattttaagcaCCAGGGTCTGTTTTCACTTATGCACAGACtgatttttgtccttttttgacCAAAATAACTCTGATTCTGGAACTGGTTTCATTCAGGCTCATAAGAACCTTGGTGCTTTTCGGCAAACCAGTCTGTTTTACACCAGTTTTAGCGGAATTGAGAATATGTCACAGAATACGGTATCAAGAGAGAGAGTTTAACACAACGGCCCTCAGTTTGCACTAAAAGAAAACCTACTATTTTCGGATGCAGaacctatttatttttgttgaaatGCACCaaatggttcaaaattaggtgcACAATCTGGAATGGAGTCCATTCACAATGTTAGAAAAGGGTTATGAGAAATCTGAGCTAAAACTGAGCTCTCTTTATCTCTCGTTTTcctaaatctgatttatttggTAATAATCTGATCTACCGGTTCTCTGAACTActtaaataatcagataactgcagtaatCCAAAAGTGAACGGATTTctaagtgcatgtaaatgccCTCACTGTTTTGtacatctttttatttttttattctcatgCTCACTATGATCCTatgatgtttttattgttttagacGCAATAATAGCAGGATTAGAAAGAAAACCCCCCATTACTTACAATTTAATCTAGAATGTAACATATTTAAGTGCAGGGCTAAGGAGGAGGGAGCTGACCATTTCGGGAGggctttagtatttttttaacagctcTCCTTCACATCATCAACAGGCATACCATAATATGCAGTGACCAAGGCTGGCTGTGGAATTTTActtggaaacaaaaaaaaaaacaaaaaagaacacCAGACTCTAAACTAACACCTACCATCATCATTTCCAGCATAGATCATGAGGTTAGGAGCAAGACAAGCGTTACGTACTCCCTTTTAGATGTgccgaaaaaaaataaaaaataaaacaaccaaaGCTATAGCAGCTATTGTCCCTAAATAATCCTCCTACACCCAACAGTACGTTCTTTAATCAGACGTTTTTGACCTGTAGAAGCCTTAACCGTAACTTTACTGCAGTCGAGTGATCCAAGCCTGGGTTAAATCTAGCTTCTTTCAACTAAGCCACACTTTAACAGGAGATTCTATACTGAGAGTCAGTTTTCAGTCAGGCTATGGTTTATCTGATATATGAGATATGCAAGCTATAACAACCTTGTAGTGATGCTAAATGTCACCCACTTCAGAAAGTCTCAGTGGCacaggattattattattattatcattattattatattcttacACTATTTTCCAACGTTTATACAACTCAAAGTCCAGAAGACACAGAGCCACCTCAGGCAATCAAGGGAATGGCAGCGTAGGAATGAGCAGGGCGGGTTAAAATGAGCAGGTTTAGGTGTTGTGCGTTTTGAGTCCACAAGGTGGTGGTAGAtgatgtagtagtagtagtagtagtagtagtagtagtggtggtggtggtggtggaggcgGAGGCGGAGGCAGCTGCACCTTCTGGCTTGGAAGCTCACGTGAGCAGGTTCAGATGGTCTGGTATCCAGCATGACTCCTCTTCCTCCCAATCAGGTAGGCCAACAGCACCACCAGCACCAGGCCAGCCAGGGCGGCTCCCACGATGATGGGGATCAACATGTTATCTTCATCCAGCGCACATTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232239 lncRNA downstream 2533 33303167 ~ 33305460 (-) True G171569
TU232224 lncRNA downstream 128144 33179383 ~ 33179849 (-) True G171555
TU232223 lncRNA downstream 129668 33177919 ~ 33178325 (-) True G171554
TU232213 lncRNA downstream 179371 33127486 ~ 33128622 (-) True G171546
TU232182 lncRNA downstream 208062 33023079 ~ 33099931 (-) True G171525
TU232243 lncRNA upstream 9723 33320685 ~ 33322970 (-) True G171573
TU232254 lncRNA upstream 53842 33364804 ~ 33369961 (-) True G171580
TU232262 lncRNA upstream 68395 33379357 ~ 33381869 (-) True G171587
TU232270 lncRNA upstream 124183 33435145 ~ 33435532 (-) True G171595
TU232310 lncRNA upstream 211239 33522201 ~ 33523894 (-) True G171627
XM_022680616.1 mRNA downstream 11886 33282954 ~ 33296107 (-) True LOC103024754
XM_007227804.3 mRNA downstream 62341 33238965 ~ 33245652 (-) True LOC103027491
XM_022680603.1 mRNA downstream 72117 33214322 ~ 33235876 (-) False LOC103028031
XM_007227783.3 mRNA upstream 215452 33526414 ~ 33532608 (-) True LOC103022452
XM_007227781.3 mRNA upstream 225062 33536024 ~ 33543858 (-) True klf5
XM_007227782.3 mRNA upstream 225062 33536024 ~ 33543854 (-) False klf5
XM_007227780.2 mRNA upstream 509202 33820164 ~ 33823054 (-) True gpr18
XM_015603986.2 mRNA upstream 527740 33838702 ~ 33841615 (-) True gpr183
XR_002651393.1 other downstream 72115 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 131709 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 535861 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 1404466 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4620314 28686050 ~ 28687679 (-) True G170854
TU232866 other upstream 1626343 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 1910753 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 2059481 35370443 ~ 35371387 (-) False olig2

Expression Profile