RNA id: XM_007227804.3


Basic Information

Item Value
RNA id XM_007227804.3
length 2029
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC103027491
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33238965 ~ 33245652 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATAAGGAAGTGTGCAGACACCAAACCGTCAAGTATTTATTCTGTTACAGGACTGAAATAAAATGACCAGAGAGAGCAGAATGGACAAGTGGAAACTGAGAATCTGTGGGATTGTAGTGCTGTTTTCAGTGATTTCTACTTCTTTTGGGTTGGAAGTTAATATTCCACAATCCACATATAAAGTTGCTCGAGGTGACCAAGTTGCCATCACATGCACTTTTCAGCCCAAAAACCCAGTGAATAATCTCATTATCATCTCATGGACTGCTGACCCTGATGGCTCATTTGATGATGAAGGGCTTAATTTTGGGACGTTCTACTCCAATGACAACCATGTCGACATTGATCCAATGTATGAGGGCAAAATCCAGATTGACAGCAATGTGAACACTCGAGTCTCTACACTGACACTGAAGCAAGCGACCCTGAGAGAAAACAGGCGAATCAAATGCCGAGTTAATATTCCTGGAGATACTGTGGGCCAAACTACAGCCACTACTTCCCTTGTGGTTCTGGTTGCCCCATCTGACCCTGTGTGCAAAATTAAAGGAACCGCTGAGTATTGGCAAAACATCAGCCTGACCTGTGTCTCTGAAGAGGGTTCTCCACTTCCCACCTACAAGTGGCAAAGCTATGATGTCAGAAACACTCCGAGATCATTCCCACCTAAAACCACAgaacAAGATGGAGTTCTTTCTCTGTTCAACATCTCCGCAGACACATCAGGTTACTTCATATGCACAGCAACCAATGAGATCCGCTCTGCCAGCTGCAACCTCACTCTGTCCGTCATGCCTTACACCATGAATATTGGCTCTACAGCAGGCATCATTGGTGGGGTCATTGCTGGAATTGCTGTTCTTGTGCTGATCATTTACTGCTGCTGCAGAAAGAAGGAGAAGCCAGAGGAGTTTGCTATGGGgcCTCCAGTGATCGAGTACCATGACGCAGCAGACAAAGAGGACATAGAAGAAGGCCCTACAGACGCGAGGAAGGCTAGCATTGAAGGGGGTATTGACCCAAAAGAGAAATATGAGCTTAAGGCTGAGAAAACGCCTAACCTGCACAGCTCTGAGGACGGTGATCGCAATTCCAATCGTCGCTTTGACCAAGACGATCGTCAGGACAGAACTTCTCATTCGAGAAGTCGAGAAGATTTGTATCGAGAGAGGGATGATGACCGCAGAGACAACTACAATAGAGGGCGCTATGATGACCGAAGAGATCGTAATGATGACCGAAGAGATCGTAATGATGATCGATATGATGACCGAAGGGATCGTAATGATGATCGATATGATGACCGAAGAGATTATGATGACCGCAGAGATCGGCCTGATGATCGCTATGATGATCGCAGATATCGACATGATGATCGCTATGACGACCGAAGAGATAGGCATGATGATCGCTATGATGACCGCAGAGATCGACGTGATGATCGCTATGATGACCGGCGAGATTACGATGACCGACAAGAGCGACATGATGACCGCAGAGATCGCTACGACGAACGCCAGGATCGTTATGATGACCGCAGAGATCGTTAAGATGATTCTCAGGATTTTGATTGGTAGATAGCATGATCTATACAACAATCTCTGTACTACCTACAGAAACTAATGTGGAGAGTTTTTTAATGGATAATTAGGATGGCCATAGCTAACCttcttttacagtgtacattacattttgttaattaaaaCCTTTCATAAAATCTTTGGAAaagtaatgatttttaaagaaatctAAGATGTTCTGAATGTATGTTTGCAAGGTTATCTCtacaaattatgttttaattcaCAATCTGTAATACTAGCTTTCACTCGCTAGCTTGTTTTGATTTAGCTATACTGGCAGCTTTACACTGGAGAACTTTTACacataaatgtatgtaaaactACAGGTGTTTTTAATTTCATTACTGTTTAAATTGTTGGTTCAACCACTTCTTTTAAGTGTAAATATGACCTAACAGCTTTAATTTGagctaatattactgtataataaacaaTTAACAAAGGAA

Function

GO: NA

KEGG:

id description
K06790 GPA33; cell surface A33 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232224 lncRNA downstream 59116 33179383 ~ 33179849 (-) True G171555
TU232223 lncRNA downstream 60640 33177919 ~ 33178325 (-) True G171554
TU232213 lncRNA downstream 110343 33127486 ~ 33128622 (-) True G171546
TU232182 lncRNA downstream 139034 33023079 ~ 33099931 (-) True G171525
TU232179 lncRNA downstream 273728 32960604 ~ 32965237 (-) True G171523
TU232239 lncRNA upstream 57515 33303167 ~ 33305460 (-) True G171569
TU232241 lncRNA upstream 62341 33307993 ~ 33310962 (-) False LOC103024438
TU232243 lncRNA upstream 75033 33320685 ~ 33322970 (-) True G171573
TU232254 lncRNA upstream 119152 33364804 ~ 33369961 (-) True G171580
TU232262 lncRNA upstream 133705 33379357 ~ 33381869 (-) True G171587
XM_007227806.3 mRNA downstream 3089 33214322 ~ 33235876 (-) False LOC103028031
XM_022680603.1 mRNA downstream 3089 33214322 ~ 33235876 (-) False LOC103028031
XM_007227805.3 mRNA downstream 3089 33214322 ~ 33235876 (-) False LOC103028031
XM_007227807.3 mRNA downstream 3090 33214322 ~ 33235875 (-) False LOC103028031
XM_007227808.3 mRNA downstream 26468 33202309 ~ 33212497 (-) True LOC103028763
XM_022680616.1 mRNA upstream 37302 33282954 ~ 33296107 (-) True LOC103024754
XM_007227790.3 mRNA upstream 63217 33308869 ~ 33318351 (-) True LOC103024438
XM_007227783.3 mRNA upstream 280762 33526414 ~ 33532608 (-) True LOC103022452
XM_007227781.3 mRNA upstream 290372 33536024 ~ 33543858 (-) True klf5
XM_007227782.3 mRNA upstream 290372 33536024 ~ 33543854 (-) False klf5
XR_002651393.1 other downstream 3087 33214322 ~ 33235878 (-) True LOC103028031
TU232221 other downstream 62681 33174053 ~ 33176284 (-) True G171553
TU232121 other downstream 466833 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 1335438 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4551286 28686050 ~ 28687679 (-) True G170854
TU232866 other upstream 1691653 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 1976063 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 2124791 35370443 ~ 35371387 (-) False olig2

Expression Profile