RNA id: TU232179


Basic Information

Item Value
RNA id TU232179
length 2555
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id G171523
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 32960604 ~ 32965237 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATTTTTACTATtggttattttatatatgtgtgcaaTTACTTATACGTATACAATATTAACGTACCCCATATAAAAACAAcatatcaaaaacaaaaaaagcaacttaacaggagagagataattagtaataatcttttttttacttttaatggtagTCAATTTAAAAATAGGTAGTTTCACAAagaattttggagaatttctattggtgcaTCCATCAATGaattttgagtttgagtttttttttttattttgagtttgagattctgtagtaaactaaaaatctacaaaaatggagatgcttcttttttttattagacagtgacgatatgtattaataatgtgtttatatatatatatatatatgtaataataatatatactatacattGGTTTGTAGCtacagttttttaataaaacaaattacaccATCAATTCAGAAtccaaataagaaataagataaatacgacttttaccattttttccctttttagtTCTCCCACACAGTCACctaattttttttcctccagaaaatatacaaaaacaaacatacgctcacacacacacctttctgCTCTTGCCCAGAACCACTCAAACTTTACAACAGCTGctccaaacacaccaaacacactcatcgagtgtgaatgtgtgtatgtatgtgtgtgtgtgtgtttgtttgttttattgccAGTCCCTATTACCAAAGGAAGCCAGCGAGATCAGAGCAGAAGCACTTCAGCTAGCATGCGAAACTTATTGTGTCTCCGCACACGAGTGTGCGTGGGAGGATGTGTATCTCAGAGTGAATGTGTctgagcgtgtgtgtgcgtgagtgtgtgtttgcccAGAAGAGTGTATGTGCGCGCAAGAGCACATGAGCATGTGGGCGTTTGGATATAGGTATTTGCGTAGGTGGGGCGTAGCTGTACATGTGTGGGTGActgagagcatgtgtgtgtgtttgcgctcTTTCTAACTCAGAAACATGGATaatattgtatgtgtgtgtgtgttcgtacatgtgtgtgtgtgtgtgtgtgtgcattaaaTACTCCCATTGGAACAGACACTGGTCCATAGCTGGGGCGCCCGTCAAACCCCTGAGCATTCCAGCGCACCCTGAGCCGTGCTGAATGCCGAGAATTTCAGCTGAAACGTGAAGACAAAAGCCAGGGGGACATTTAAGAGGGTTTTAGCTCAGACAGATCCCTGGGAATCGGTCTCACCCCCCCAACCTCCCCCTCAACTCCTGGCTGCGGTGGGAAAATCCAGCCGCTCAGGCCTGTATTTCAGGTTGAGCTGGAGACGGTTGTAGGCTGCCGCTGAGGGGGCTTTCCTGAAATGGTGCACAATCAGGAGGGGACACAAAGAGACCCACCTGTGGCGCTCTCCGTTCATGTGCTGACAGTCCGCTCGCAGTGGGGAGACGTCTCGCTTGTTGTGGCCCCGCGGGGCCGCTGATATTTTTCATTTCCAGTTCACTGATTAACGCAGTGATGTATTGGAGCCGTGTGTGGTCTGAGATGTACTCCAATGCGGCACTGGAGTGAATGTGGAGGACAAGCAGGGCTGCCTTTGTATGACTGTATGTGTGGTATATGTGTAGCTACTTAAACTCCATGAATGTGAGATGTAAgcagtgccggtgttgtgccgaattcagctcccccgccaggaaaagcaccttcTCTCGGAGCGCATTTCTAAGTAAAGAGAACCCCTTAGGTAACaatttacttggatggtccatttgatggtcagctaacattcaactgaatgtctatcAACTGCAACTTAAtcatatgttgaatgtaaataattcgaaaaatagaacataatcttacacctaaccctaaccttaatcaaccctaaaatcgaaccttaaccctaaacttatcccttaatcaactctaaaatctaaccatGCACTTAACCCTATCCCTAACCTAATCtttaaacctaaccctacaccaaaccctaaccttaccacttaatcaaccctaaaatctaaccctaacccttaccattaatcaaccttaaaatctaatcctacagctaaccctaacctaaacccttaatcaaccctaaaatttaaccctaacctaaacccttaatcaaccctaaaatctaaccctaaccataacccttaatcaaccctaaaatctaaccctaaccttaacccttaatcaaccctaaaatataaccctacaaataaccctaaccttaatccttaatcaactctaaaatctaactctacacctaaccctaaccttaaccattaatcaaccctaaaatctaaccctacacttaaccctaaccctaacttaaactttaaatctaactctaaacccaatgctaaaatgttaGGATTATAGTTGGGGTTggatgtagggttacattcaatagagaatcatttacttccACCTTTTAGTTCAATTGCATTTATTAGACACTcatttgaatgttagttgaatgtctgTTGAGCATTATCAAATGGACCattcaagtaaagtgttacccccCTTAACAGACTAggatttttgttcattttctgcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651392.1 lncRNA downstream 28370 32914107 ~ 32932234 (-) True LOC111194944
TU232149 lncRNA downstream 28964 32913918 ~ 32931640 (-) False LOC111194944
TU232130 lncRNA downstream 149403 32805637 ~ 32811201 (-) True G171479
TU232111 lncRNA downstream 257748 32696106 ~ 32702856 (-) True G171461
XR_002651311.1 lncRNA downstream 276956 32682328 ~ 32683648 (-) True LOC111194865
TU232182 lncRNA upstream 57842 33023079 ~ 33099931 (-) True G171525
TU232213 lncRNA upstream 162249 33127486 ~ 33128622 (-) True G171546
TU232223 lncRNA upstream 212682 33177919 ~ 33178325 (-) True G171554
TU232224 lncRNA upstream 214146 33179383 ~ 33179849 (-) True G171555
TU232239 lncRNA upstream 337930 33303167 ~ 33305460 (-) True G171569
XM_022680594.1 mRNA downstream 81937 32872118 ~ 32878667 (-) True c19hxorf36
XM_007227821.3 mRNA downstream 156710 32799174 ~ 32803894 (-) True fundc1
XM_015604852.2 mRNA downstream 162478 32782380 ~ 32798126 (-) True efhc2
XM_022680596.1 mRNA upstream 135697 33100934 ~ 33107739 (-) True slc35a5
XM_007227817.3 mRNA upstream 172570 33137807 ~ 33169651 (-) False dcaf6
XM_022680598.1 mRNA upstream 172570 33137807 ~ 33169651 (-) False dcaf6
XM_007227815.3 mRNA upstream 172570 33137807 ~ 33169651 (-) False dcaf6
XM_007227814.3 mRNA upstream 172570 33137807 ~ 33169651 (-) True dcaf6
TU232121 other downstream 188472 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 1057077 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4272925 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 5057705 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 7055122 25896595 ~ 25905482 (-) False LOC103030841
TU232221 other upstream 208816 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 249085 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 1972068 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 2256478 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 2405206 35370443 ~ 35371387 (-) False olig2

Expression Profile