RNA id: XM_007227814.3


Basic Information

Item Value
RNA id XM_007227814.3
length 4608
RNA type mRNA
GC content 0.50
exon number 21
gene id dcaf6
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 33137807 ~ 33169651 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGTGTGGCGCTGCGCATAGTTGATGGTCTTCAGAGCGCACTGGTGGTTTACAGTGAGAGCAGCTCGAGTTTCAGGGGCTCAGGGGAAAGGATTCTGGAGAAGCAGCTGGGCTTAACTACAGACAtatatccctgttttttttatttattttaaacgtCGTAATGATTGTCCTGAAGGAGAAGTAGAGTATCTCTCTGTGGTTTATCTCCTGTGGATGTTTAGTGCTGCGGATTCAGTGCTGCAAAGAGGCGTTTGAACGGGACATTAACACTGGGTCGATTAAGGTggattcatcatcatcatccttcctttctcccctctttctctctccccctgtctctttatctctttctcaatGCTGCTGGTCTTAAAAGAAGGGCTCTGAGAGCTGACTAATAATAATGTCCTGCCCTGGAAACTTGATTTGGGATGTAAGGAAGCGCGCAATCGGCTACAACGACCCCAACGCTGTCAGAGCCAACTATTTAGGCAGGAGAGAATTTGTGCAGCGTCTGAAGCTTGAGGCCATACTAAATGTGCACGATGGCTGTGTTAACACAATATCCTGGAATGACACTGGAGAATACATCTTATCAGGATCTGATGACACCAATTTGGTTATCACAAACCCATACAACAGGAAGGTTAAAACAACTATTCGTTCGGGTCACCGGGCCAACATCTTCAGCGCAAAATTCATGCCCCTCACCAACGATCAGCAGATTGTGTCCTGCTCAGGAGACGGCATCATCTACTACACTCACACGGAAAAAAGCGCAGACATCAACAGGCAGTGCCAGTTCACCTGCCACTATGGAACTGCTTATGAGaTAATGACGGTTCCAAATGACCCCTACACCTTCTTATCCTGTGGTGAGGATGGCACAGTTCGGTGGTTCGATCTGCGCATGAAAACTAGCTGCACAAAAGAAGACTGTAAAGATGATATTTTGATTAACTGCCGGAGAGCTGCTACCTCGATATCCATTTCTCCTCTGGTGCCCTATTACCTTGCTGTGGGATGTTCTGACAGCTCAGTTCGAATCTACGACAGACGAATGCTTGGCACAAGAGCTACGGGTAATTACATGGGCAGAGGGACGACAGGCATGTGTGTACGATTTGTCCCTGCCCACTTGTCCAACAAGTCGTGTCGCGTGACATCATTATGCTACAGTGGAGATGGACAGGAGGTCCTGGTCAGCTACTCCTCTGACTACATCTACCTGTTTGACCCCAAGGATGACCAGGCCCGAGAGCTCAAGGGTCCGTCTGAGGAGAGGAGGGAGGAGCTGAGGCAGCCGCCGGTCAAGCGGTTGCGTCTGAGGGGAGACTGGTCAGACACGGGACCCCGTGCCCGCcctgagagcgagagagaacgaGATGGAGAACAGAGCCCCAACGTGTCTCTCATGCAGAGGATGTCGGACATGCTGTCGCGTTGGTTTGAGGAGGCCAGCGAGGCCCAGAGCAGCAGAGCTCGTCCACAGACTCGGCCCAGAGgtACTGCAGCTCGGCCAGAGGGGTCTGCCGAAGCCTCCGAGATCCCCTCTCAGGAGCCTTTGGGGGCTGAGGGCCCCATGGAAATGGAAGCAGTTGCCCCTGAAGCTCCCAGCACacctgcctcagctccagccacTGCAGAGCCCCTCCCCAAAtccatctcctcctcctcttcttcctcaggTTCTTCTTCCACTGTGACAGCCCCGCCCCCTTCCAGCTCCTCCTCACTGGAGAGCGCcgcctcttcctcttctctggTCTCTTCTCCAGACTCTGAGCAAAAGAGCCAGGCTGAGGTCACGCCCACTGGCTCGGCCACACCCACCCCCTCCACAGAGGCTGTGTTGTCTGAATATGGCCCCCACAGGTTGCCGGTAAGTTTAGTGTGTAGGCGTTTGCAGAGGCTGCTGCTCTTGGCTGACCCCCCCGGGCAGGGTCAGCGGCCAGCCTCTCGAGCCTCCAGAGCCCCCGGGGCCTCCAGCTCAGAAAGCCCAGCCCAGGGGTCTGCTGCGGAGACCAGCACCCCAACAGATTCCCCCTCATCTGTGGTAAACAAGCAGCTCGGATCCATGACTCTGGATGAGCAGCAGGGAAGCACTGAAGCATCAGGGAACGTATGCAGTGATATGCAAAAAACTCTCAGCGAGGCGTGTGCTGTGGCTGGAGAATTGGCCTCGTCTCCAGCAGCCCCAGCGACCCCCAGTGGCTCAGGCAGCAGCGggagcggaggaggaggaggaggttcaTGTCCCATTCGCACGGCTCCAACGTCCAGCACAGCTGAACCCGTCCTCAGCCTGCACTACAGCACTGAGGGtaccaccaccagcaccatcaAACTGGACTTCACTGATGAGTGGAGTACTCCAGGGTCTGGTTCCAGAGTGAGTGGAGGAGGACAGAAACCTGTTGAGACTTTAGAGAGCCAAGAACCTGCAGAAAGGAGCCCAGAGCAGGTATTAGCAGGGCCGGTAGCAGCCGGCAGGCCTGCGACAGTCCCAGAGGAGAGTGAGAGTGCAGACAGCAGCACAGAAAAAGCCTCCGGCAGCTCTGAGGGCAGCACACCTCTGCAAGGTCCCGCCACAGGGGGCCTTTCTTCAGGGGCTGCGGAGAGTCCGGCTGGCCAAGATGATCTGCCAGCAGCAGGTTCAGAGTCCACCGAGGGGAGCAGGAGGACGGACGCAGCCAGGGAGGGTACTCAGGGGCCCGCACAACCCTCCCGCAGTCACCAAGACTCAGACGACAGCGATGACGATCCAATCCTCATCCCCTCAGCCAGGTACAGAGGAGCTCAGGGACAGAGATTTAATTTCAGAGGGTCTTCAGTAGGTGAAAGGATGATCAGGCGCTCGGCAGCAGCTCGCATCCAGGAGCTGTTCCGCAGAAGGAAGGAGAGGCGTGAGATGGAGGAGAGCGAGACGCAGAACATCAGAAGACCTTTAGTCAAAATGATGTACAAGGGCCACCGTAACTCCAGGACAATGATAAAGGAGTCGTGCTTCTGGGGGAATAACTTTGTCATGAGTGGCTCAGACTGCGGCCACATCTTCATCTGGGACAGGCACACGGGAGAACACTTGATGCTGCTGGAGGCTGACAATCATGTGGTCAACTGCTTACAACCTCACCCTTACGATCCCATTCTTGCTTCATCCGGCATCGATTATGACATCAAACTCTGGTCACCACTGGAGCAGTCCCCATCGTTTAACAGAGACCTTGCTGAAGAGGTGATCGCTCGTAATGAACTGATGCTGGAAGAGACAAGGAACACCATTACTGTACCTGCATCCTTTATGCTACGAATGCTGGCATCACTCAATCACATACGAACAGATCGCTCTGAGGGCTCCGGACAGGAGAACGAGGATGAACAGTAGCCCTGCTGTGACGCCCATCCCCAATAAGCTGTTTCTTTTGCTTTGAAACAGTTAAATATCTGCAATTTGTACAGATTATTGTGTAGAATATCCCCTTGTTAGATCCATTTTTAgtactcttttaaaaaaaaaaaaaaaaaaaaaaaaaaaatacaaaacagctTTCCTACTGATTTACTCCAAACACGAGTAAAAGGCATATGGGAgggaaaatgaaaaacaaaaatgaaaacaggggcaatatataaatatataaacatatatatatataaaaatatatttaaaaatgaaaatgtgggAAGAGGAATGTAGGTGACAGGTGCTTCAGAGAATATTTAAGTGCAATATTTTTGTTGCGCAAATGGTTGAGCTTGTGTTGTGTCCGTGCGCGTGTGTGtaagtttttctttcttttttttgtagcatTGTATCACTAAATACTTCAAATGTTTGTGCACATGGAGTATGCATGTCAAGACATGAAATCATGCTTTACGTTTTCGTTGCTGAAAACGATTCAGATTTTCAGTTTTTCATCTGTACtcagtgtgtggtttgtgtaaAGACAGACTGGCATTTTCTATCTCGCGGATTCTCCTTTTGTTCTTCCAGGAGTGACCTGTTTGTTTGGAATCAGAAATTAACTGCCTTGTCTACAGAGCACAAGTACGATCTATAGGGTTTGGAATCTGAATGTCGGACATGGCTGTAGTAAAGCGCACTGCGTGTGTAAAATGAAGCGGGTCTGAGTGCAGCAGTTGCTTTTGTTTAATCGGTGTGGCTCACTGCTATCAGCTGAAGTGGTTCTGCTTAAGGAGAGCTGGCAGTGCATTGTTTTGAATGTTTCACTAACAGGACAGATGGTATTTGTTTTGGCAGCTGCTGGCCAGGGCACTCTGCTAAGTGGCCACTGACTATAGGGAAGCCGAAAAAATGGCTCTGCCTCAGCCCTTGTTCCCTGCGGTGGTTTACACCAGTCATTTCACACCATTCAGGAATGTGAGCCGTCTCTTCCTCGTCCACCAGTTGTACCCTCACGAGAACTTCAGCTGTACACGAAGTATAAAGGAGAGAATGAGTATTTATGGTAATGAATGTGCTGTGAAATATGGACACTGAACGTGTTTTGAAAAGTACCTTTTAAAaggatttaattattattacatttgaaATGGAtaagcaaaatgttttttttggatcgCAATAAACCATTACAAGAAA

Function

GO: NA

KEGG:

id description
K11795 DCAF6, IQWD1, NRIP, ARCAP; DDB1- and CUL4-associated factor 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232213 lncRNA downstream 9185 33127486 ~ 33128622 (-) True G171546
TU232182 lncRNA downstream 37876 33023079 ~ 33099931 (-) True G171525
TU232179 lncRNA downstream 172570 32960604 ~ 32965237 (-) True G171523
XR_002651392.1 lncRNA downstream 205573 32914107 ~ 32932234 (-) True LOC111194944
TU232149 lncRNA downstream 206167 32913918 ~ 32931640 (-) False LOC111194944
TU232223 lncRNA upstream 8268 33177919 ~ 33178325 (-) True G171554
TU232224 lncRNA upstream 9732 33179383 ~ 33179849 (-) True G171555
TU232239 lncRNA upstream 133516 33303167 ~ 33305460 (-) True G171569
TU232241 lncRNA upstream 138342 33307993 ~ 33310962 (-) False LOC103024438
TU232243 lncRNA upstream 151034 33320685 ~ 33322970 (-) True G171573
XM_022680596.1 mRNA downstream 30068 33100934 ~ 33107739 (-) True slc35a5
XM_022680594.1 mRNA downstream 259140 32872118 ~ 32878667 (-) True c19hxorf36
XM_007227821.3 mRNA downstream 333913 32799174 ~ 32803894 (-) True fundc1
XM_015604876.2 mRNA downstream 339681 32784283 ~ 32798126 (-) False efhc2
XM_007227822.3 mRNA downstream 339682 32782380 ~ 32798125 (-) False efhc2
XM_022680602.1 mRNA upstream 22132 33191783 ~ 33200687 (-) True LOC103029083
XM_007227809.3 mRNA upstream 22132 33191783 ~ 33200686 (-) False LOC103029083
XM_007227808.3 mRNA upstream 32658 33202309 ~ 33212497 (-) True LOC103028763
XM_007227806.3 mRNA upstream 44671 33214322 ~ 33235876 (-) False LOC103028031
XM_022680603.1 mRNA upstream 44671 33214322 ~ 33235876 (-) False LOC103028031
TU232121 other downstream 365675 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 1234280 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4450128 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 5234908 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 7232325 25896595 ~ 25905482 (-) False LOC103030841
TU232221 other upstream 4402 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 44671 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 1767654 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 2052064 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 2200792 35370443 ~ 35371387 (-) False olig2

Expression Profile