RNA id: XM_007227822.3


Basic Information

Item Value
RNA id XM_007227822.3
length 2492
RNA type mRNA
GC content 0.48
exon number 15
gene id efhc2
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 32782380 ~ 32798126 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTAGCAACTCAAGCTTCAAACAGTGAGCCGGAGCTCGCGGGTCTCAGCCGCTGGATGAGGGACTGTTCAGgacttttattagttttattagtattttctaTCTATTTAGTGTATAAACATGCCTTTACCTCTGCTCCCCGGGAATTCCCTCAACAGAAACctgGGAAAAGAAAAGTTTCACAAGTCTCAACATTTTGAATACTCAAAAGGAATACCATTAATGGTGGGCGCAAAAAAGCCTGGCATTGGAGGAGAACCGCTGCTCGGCCAGACGGCAAAACCTCAGTACTCATTGTTTCCAAAAGAACAAGGCAGTGGTCCTTCATGGTTAGCCTTCGACAAGCAGGTGCTTTGCTTTGATGCATATTTCCAAGAACCTGTTACTCAGAGCAGAGAGGAAACATACAGAGTCAGAAAGTGCAAAATTTACTACTACTTGGAAAACGACACCATACAGGTTGTGGagccaataataaaaaacagtggCATGCAACACGGAACATTGATTTGCCGCCATCGCATTCCTCTCCCGGCTCCTAATGATGACCAGTTTTACAATATACAGCACTTTAATATCAACCAGGAGATTGAGTTCTACTCCAGAACCTACATGATTACAGACTGTGACCCTTTCACACGTAACTTTCTGAGGAAGATGGGGGTACGCATTAATTCCTCTGCTACAGCACCAGCAGATCCTTACACAACACTTCGTCAGGAGCTGGAGGACAGCATGAAGCCACGGCGCCCATATGAGAGGCAAGATACTTTAAAGCAGTTCCTGGAGCACGATCATAATGTCCTGCGATTTTACTGCTACTGGAATGATACCGAGAGCATGTTTGGTGACCCCAGAGAGCTGATCCTGCATTACTTTTTGGCTGACGATACCATAGAAATCCGAGAGGTTCTGTATCCAAACAGTGGGCGGGACACCGCCCCTAAATTTTTGAACAGGAGTAAAATTCCTAAGAACGCTCCAACTCCGACACACCAGCCTGGAGAAGTTACAGGCCGCACTGTCCTCAATGTGATTGGACCAGTGGGACAAGGGAGTCGCTACATTTTGGACAGGCTCAATACAGGAGCTGTGGAGGAGGAGTTCTACAAGGACTCTGACCTGACAATAGGAGGGGTCATCAACGTCTGGGGCCGgtcagtgttgatctgtgacTGCGACAATTTCACCAAAGAGTACTATCGCTCCAAGTATGGCATCGAGGACTTCACCCCTGTACAATACAAGGTCCCTCTGCCCCCAAAACCAGCCAGAGAGATGCCTCCTTACACTGGCTTTGGATCTGAAGAGGACTCGCTCTGTTCCTGCCAGGGTCTGATACCCAAGGCGCCACAGAAAGACTTCAGGAAGCTGATGGAGAAAGACAGGCAGGGTCTGGAGAGCAATGTGCTCAGATTTGTTGCGAAAATCTTGACAAATAATGCCGTTAACAACGAACGCACCTTTATCATTTCCTTCTACCTGGGCGATGACACTATCGCAATGTTTGAACCCACACAGAGGAACACAGGAGTGCTTGGTGGCAAGTTCTTGGAGAGAAGCCGGGTGAAGAAACCAGGGCAGGAGCTCTATAAGAGTGAGATGTCTGAGTGCTACATGGCTCAGGACCTGTATGTGGGAGCCAGACTCTGCATAAGTAACCAGCTCTTCCAGCTAGTGGATGCTGATGAGTATGCTTTCAACTATATGGAGCAGCATGCAGAAGAGTTCCCCAGGGCCAACATTGGCATCATCCTGAGCAAGTTAAAATCCATCcatgcagagaagcagaaggaGATCAAACACTTCCTGGCAAACAGTGACCCAGGAAACACCGGTCTCGTTCCTTACGAGTCCTTCAGGTCTCTGTTGGCAGATACGGGCTGTCAGCTGTcggagcatgagatcataacGTTGGGCCGTACCTACTCACTGCGAGAGCAGCCTGAACCTAATGTAGGCTTCATGCTGGCTGTGGCTCAGGACCACCTGAAGAAGAAACTATTTGATAACTTCCCAGACCTGCTCCGAGCTTTCACCCATGAGGATCGGGACAGAACTGGACATCTTTCAGCTAAAGAAGCTCGGACCATCTGTAAAGCCTTCCGCCTGCCACTGGCTGATGACCTTCTCAGAGCCCTTCTGCAGAAATTTGCAAACGAGTCTGGGAATATTGATTACAACGCTTTCCTCTCGGGAATCAACTGGAGAGAGAATCCTTCCCCGCCACTTCTACCAGATGATGCCATAAAGTTTGATGTAGACTGGAGCGGAGAAGCTGTAGGCCCTGCAGTAACAGCCGTCAACTACTCTCTTTTACTGGATGATGTCTTTGGCAGTGCTGGCAacagtgagagcagctgagaggTACTGAGAtcacctctctctccctcaaacACACCAGCATTAACTTCGGAGAACATGCCTGCTGTATGTATTttcacaaacagaaaaaaagaaaacgttcAAATAAATTCATACATCTGTCGCATTA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232111 lncRNA downstream 79524 32696106 ~ 32702856 (-) True G171461
XR_002651311.1 lncRNA downstream 98732 32682328 ~ 32683648 (-) True LOC111194865
TU232113 lncRNA downstream 103404 32678654 ~ 32678976 (-) True G171463
TU231843 lncRNA downstream 537947 32240638 ~ 32244433 (-) True G171280
TU231788 lncRNA downstream 803088 31979091 ~ 31979292 (-) True G171237
TU232130 lncRNA upstream 7512 32805637 ~ 32811201 (-) True G171479
TU232149 lncRNA upstream 115793 32913918 ~ 32931640 (-) False LOC111194944
XR_002651392.1 lncRNA upstream 115982 32914107 ~ 32932234 (-) True LOC111194944
TU232179 lncRNA upstream 162479 32960604 ~ 32965237 (-) True G171523
TU232182 lncRNA upstream 224954 33023079 ~ 33099931 (-) True G171525
XM_022680592.1 mRNA downstream 6362 32758507 ~ 32776018 (-) False ndp
XM_007227823.3 mRNA downstream 10414 32758507 ~ 32771966 (-) False ndp
XM_007227824.3 mRNA downstream 36809 32699967 ~ 32745571 (-) True maob
XM_022680587.1 mRNA downstream 145204 32408907 ~ 32637176 (-) False cask
XM_007227821.3 mRNA upstream 1049 32799174 ~ 32803894 (-) True fundc1
XM_022680594.1 mRNA upstream 73993 32872118 ~ 32878667 (-) True c19hxorf36
XM_022680596.1 mRNA upstream 302809 33100934 ~ 33107739 (-) True slc35a5
XM_007227817.3 mRNA upstream 339682 33137807 ~ 33169651 (-) False dcaf6
XM_022680598.1 mRNA upstream 339682 33137807 ~ 33169651 (-) False dcaf6
TU232121 other downstream 10248 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 878853 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4094701 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 4879481 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 6876898 25896595 ~ 25905482 (-) False LOC103030841
TU232221 other upstream 375928 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 416197 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 2139180 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 2423590 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 2572318 35370443 ~ 35371387 (-) False olig2

Expression Profile