RNA id: XM_022680592.1


Basic Information

Item Value
RNA id XM_022680592.1
length 1383
RNA type mRNA
GC content 0.50
exon number 3
gene id ndp
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 32758507 ~ 32776018 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gattttaatatttatgttcATGAGAAAGTTGTGGTATACGGTGGAGCTCAGCCCAAAATCTCCAGACGCTCACACCTACATGTTTCTACAGGATAAAAAAGAGGCGAACCTGAGAGGACTCCACTTGAGAAAGACAACTTTGTGAGGAAACCTctgcaaaaaacattttacagttctgctgagtgactgaAAAGAACCACCCAAGCAGAAACCGCAGGAGATGGCGACGCCTGAGGAACGAGCTAACTACGCGCTCCAAGTTACCAGTGTGGTACCAGAAGTTGGGCAGAAAGTTCTGCGTTTTCCTCTGTAGTAGGATAGGCATCATTTCCCTCCATTCGTCTGCCAGGAAGCTTGCTCACTTTTGCAATCGAGCCAAAGGTCCAGTATGAGGAACGCAGGCCCGCTAAGCCAGCCAGGGATTGTGCTGCTGCTGGTCACGTGTCCGCTGCTGAACATTCTGCGTGGAGTTACCTGCAAGGCTGAGAGTGGACACCTTGGAGACACTGATCCAGACAGGTGTATGCGGCACCACTTTGTCGAGACCATCACGCATCCCATCTACAAGTGCAATTCCAAGATGGTTCTGCTGGCTCGCTGCGAGGGTCACTGCAGCCACACGTCTCGCTCAGACCCCCTCATCTCCTTCAGCTCCGTCCTCAAGCAGCCGTTTAAGAGCACGTGCTTCTGCTGCCGCCCGCACACCTCCAAGCTGAAGGCGGTGCGCCTGCGCTGCTCCGGCGGGACCCGAATAACCGCTACCTACCGCTACATCCTCGCGTGCGGCTGTGAGGAATGCAACTGAACGGGTTCGCCGAGAGGACCCTGCCAAGACTTTAAACTGTTccatttttctgtgtgttttattgctgtCTATATTAGAGAAGCTATTTCACGATTCATTAGCAGCGCCGGAGTTGGTGGACATCATGCCAGCAACATAAAATCTCAGCATCCCAAAGAAAAGAAACATTCATTCAAGTGTTGCACCTGGGCCTGGTCTCCACCAGTTGATTAGTTTCGAATGCATTCCATCGCTTTTGATCACCAAATGTGGAAAATTATGGATGCTGGCAAACCACAGCGCAATCATGAGAGTACCTCGGAGGTGCCGGGTCCGTTCTCCAGGCTGGAGAAGGTCCAAGGAAAGCGCGAGAGCTCTTGGGAACGGCTCGTGGGTTGAGGAGGCAGTTGCCGGGGGTGACGTCTCTGTTTCAGTTGCTGGACACTGTACCGTAGATGCTCGGACTGTACGAGAGGATTATGGGCTGTGTCTTGAGAAACTGCCCTGAGAAACTTCTAAATGTTctggttattatttttttctttattttgcctAGATGTTCAATCTTCCCGTTCTGGTAATAAATGCTATTAAAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232111 lncRNA downstream 55651 32696106 ~ 32702856 (-) True G171461
XR_002651311.1 lncRNA downstream 74859 32682328 ~ 32683648 (-) True LOC111194865
TU232113 lncRNA downstream 79531 32678654 ~ 32678976 (-) True G171463
TU231843 lncRNA downstream 514074 32240638 ~ 32244433 (-) True G171280
TU231788 lncRNA downstream 779215 31979091 ~ 31979292 (-) True G171237
TU232130 lncRNA upstream 29619 32805637 ~ 32811201 (-) True G171479
TU232149 lncRNA upstream 137900 32913918 ~ 32931640 (-) False LOC111194944
XR_002651392.1 lncRNA upstream 138089 32914107 ~ 32932234 (-) True LOC111194944
TU232179 lncRNA upstream 184586 32960604 ~ 32965237 (-) True G171523
TU232182 lncRNA upstream 247061 33023079 ~ 33099931 (-) True G171525
XM_007227824.3 mRNA downstream 12936 32699967 ~ 32745571 (-) True maob
XM_022680585.1 mRNA downstream 121330 32408907 ~ 32637177 (-) False cask
XM_015604852.2 mRNA upstream 6362 32782380 ~ 32798126 (-) True efhc2
XM_007227822.3 mRNA upstream 6362 32782380 ~ 32798125 (-) False efhc2
XM_015604876.2 mRNA upstream 8265 32784283 ~ 32798126 (-) False efhc2
XM_007227821.3 mRNA upstream 23156 32799174 ~ 32803894 (-) True fundc1
XM_022680594.1 mRNA upstream 96100 32872118 ~ 32878667 (-) True c19hxorf36
TU231746 other downstream 854980 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4070828 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 4855608 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 6853025 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 7249091 25502135 ~ 25509416 (-) False LOC111194864
TU232221 other upstream 398035 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 438304 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 2161287 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 2445697 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 2594425 35370443 ~ 35371387 (-) False olig2

Expression Profile