RNA id: XM_022680585.1


Basic Information

Item Value
RNA id XM_022680585.1
length 5657
RNA type mRNA
GC content 0.46
exon number 27
gene id cask
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 32408907 ~ 32637177 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctctctctctctctctctgtagctccTGTAGAAGGAAAACGCAGGAGCGCCTGGACACGACGAGCTGCGCGCGCTCGAACGTCGCGCGCTGGTTGGTGTTCCCGGAGCCGCTCGAGAGGCGAGTTTGCGGCAGTTTGGAGTCTCGCGCCGCTCTCGCGCACTTTTTTTCGTGTAACGCCAACGGCTTTAGGAGAGAAGTGTGAAGCTGGCGAGTTCCTAACAGCTCGAGCTGCTTAAAGCTCGCTGATTGTTGGATTGTTGGTGCTGAAGAGGCTTAAGGTGgggcagaagagagagagagaagcggGGCTGATccctcactgtctgtctgcctgccccTTATCCagctgaagagagagaaagagggggaaaaagaaggaaaaacgAGACATTTCCCCTCCCTTCCCTCCCGCTTGTTGAGTTTTTTTGGGGGGCGCGCGCTCAGAGCTTCAACAGTGGCCCTGATCCGCGGACGCGTCTTTTGGGGAGTGAATTATTCTTATTCCCCAGTGCAGCCGGACCATGGCCGACGACGACGTGCTGTTTGAGGATGTTTACGAGCTCTGTGAGGTGATTGGAAAGGGGCCGTTCAGCGTGGTGAGAAGATGCatcaacagagagacaggccAGCAGTTTGCGGTGAAGATCGTAGATGTGGCCAAATTTACCTCCAGCCCCGGCCTCAGCACAGAAGATCTGAAGAGAGAGGCCAGTATCTGTCACATGCTGAAGCACCCCCACATTGTGGAGTTGCTGGAGACGTACAGTTCAGATGGCATGCTCTACATGGTCTTTGAGTTTATGGATGGAGCAGATCTCTGTTTTGAGATTGTAAAGAGAGCAGATGCTGGATTTGTGTACAGCGAGGCCGTAGCGAGTCACTACATGAGACAGATCCTCGAAGCACTTCGGTACTGCCATGACAACAACGTCATTCATAGAGATGTAAAGCCCCACTGTGTGTTGCTGGCATCAAAGGAGAATTCAGCCCCGGTGAAGCTGGGCGGCTTTGGAGTTGCTATACAGCTGGGAGAGTCAGGTCTAGTGGCAGGAGGCCGGGTAGGCACTCCTCACTTCATGGCTCCTGAGGTGGTGAAGAGAGAGCCGTATGGGAAGCCGGTGGACGTGTGGGGCTGCGGGGTCATCCTCTTCATCCTGCTCAGCGGCTGCCTGCCCTTCTATGGCACCAAAGAGCGCCTGTTTGAGGGCATTATTAAGGGCAAATACAAGATGAACCCGCGGCAGTGGGGTCACATCTCGGAGAGTGCTAAAGACCTGGTGCGGCGCATGCTGATGCTGGACCCTGCTGAGAGGATCACTGTGTACGAGGCCCTCAACCATCCCTGGCTCAAGGAGAGAGACCGCTATGCCTACAAGATCCACCTCCCTGAAACAGTGGAGCAGCTGAGGAAGTTCAATGCCCGGAGAAAGCTGAAAGGTGCTGTACTGGCAGCGGTCTCCAGCCACAAGTTCAACTCCTTCTACGGGGACCCACCAGAGGAGCTGGCTGAGTTCTCTGAAGATCCCACCTCATCTGGCCTCGCACCCGGACTTATAGCTGCAGAAAgggcTGTGTCGCAGGTGCTAGACAGTTTGGAGGAGATCCACGCACTGACAGACTGCAGTGAGAAAGACCTGGACTTTCTGCACAGTGTCTTTCAGGACCAGCATCTCCACACACTGCTAGACCTGTATGACAAGATAAACACCAAGTCCTCCCCGCAGATCAGGAATCCTCCGAGCGACGCTGTTCATAGAGCCAAAGAGGTCCTTGAAGAAATTTCCTGCTACTCAGAAAACACAGACGCTAAGGAGCTGAGACGAATCCTGACCCAGCCCCATTTTATGGCCTTACTCCAGACTCATGATGTTGTAGCGCATGAAGTATTCAGTGACGAGGCACTGAGGGTCACCCCCCCGCCCACCTCACCCTACCTGAACGGAGACTCACCTGAGAGCACCAACGGAGACATGGACATAGAGAATGTCACACGAGTACGGCTGGTACAGTTCCAGAAGAACACAGACGAACCCATGGGTATCACGTTGAAGATGAATGACCTAAACCACTGCATCGTGGCCAGAATAATGCATGGTGGCATGATTCATAGACAAGGCACGTTGCACGTTGGAGATGAGATCCGGGAAATCAACAGCATAAGCGTAGCTAATCAGACGGTGGAGCAGCTCCAGAAAATGCTTCGAGAGATGAGAGGAAGTATCACATTTAAGATTGTTCCAAGCTACCGAACACAGCAGTCGTCATGTGAGAAAGAGTCCCCTACCACCTCCAGACAGTCCCCTGCTAATGGCCATTCCAGCATTAACAGTTCTATCTTGGACTTGCCGTTGACCATCCAGCCAAAAGGACGCCAGataTATGTGCGGGCACAGTTTGAGTACGATCCAGCCAAAGATGAACTCATCCCCTGTAAAGAAGCAGGAATTCACTTCAGAGTGGGGGACATCATCCAGATCATCAACAAGGACGACCATAACTGGTGGCAGGGCAAGCTGGAGAACACAAAGAACGGCACAGCCGGACTCATTCCCTCACCTGAGCTGCAGGAGTGGCGGGTGGCCTGTATGGCCATGGAGAAAACGAAGCAGGAGCAGCAGGCCAGCTGCACTTGGTTTggcaagaagaagaagcagtaCAAAGACAAGTATCTAGCGAAGCACAACGCAGATCTCGTCACGTATGAAGAGGTAGTGAAGTTACCAGCATTCAAGAGGAAAACGCTAGTGTTATTAGGGGCTCACGGTGTTGGCAGAAGACACATCAAGAACACGCTCATCACAAAACACCCCGACAGATTTGCTTATCCCATTCCACACACGACCAGACCTccaaaaaaagaagaggagaatGGCAAGAACTATTACTTCGTTTCTCACGACCAAATGATGCAGGACATCGCCAATAACGATTACCTGGAGTACGGCAGCCACGAGGACGCCATGTACGGCACCCGGCTAGAGACGATACGCAAAATCCACGAGCAGGGCCTGATATCTATACTGGATGTGGAGCCACAGGCTCTAAAAGTCTTGCGGACAGCAGAATTTGCTCCTTATGTGGTTTTCATTGCTGCGCCAACCATCACCCCAGGCATGAATGAGGATGAGTCACTCCAGCGGCTGCAGAAAGAGTCTGAGATCCTCCAGAAGACTTACGCACATTACTTCGACCTGACCATCATCAACAACGAGATCGACGAGACAATCCGGCACCTGGAGGAGGCCATAGACCTGGTGTGCACCACGGGCCAGTGGGTTCCCGTATCCTGGGTCTACTAGAACATCTCAAAAACTGCCCCACAGACTCTTCCCATTCTTCCCAATAACCCTGTCTCTCTGCCATGTGTCTCTGCAAAAAAAGacaagagaagaaaacaaaaagaacaacacATCATTCCCAGGGCGAGAAAAACCCGCCTCCAGTTTTTAAAGCAACCTCAGTGTACATGACCTGCAGTCGATCCAATCTCGGCCCCCCGTAGACgtaatgttgtatttaaaaaaagacagaaaattcCTGAATATTGTAATGTCCTTATAAATAGGGTGCAACATTTTGTAGACTTTTGATTTAAAGAGACAGTATCTTAAtatctgttttgtgttttttttttttttttcatgattcctGCTCTACAAATGCTGCTGTTCATtttaataccacttacaacatGGGTGATTTTTCACATAGGGGAACTTTTATGTATCCAGATTATAAATTCTCATTAGTACAAAATAAATAGCTAGATATAAattgtattgttatttattgcACCATGTATTATTTGTATGCATTAAACCTTTATGATTTCCTTCTATTTTTGATACTTTAAACAGCAGTACTTTGCTGCTTTAGCTACTCTGGTAGCTTGTCCCAGTCCACACAACAAAATgtcagtgtttgtttttgtaaaaatttACAGAgacatattgtattattttttattcatatctatgcaatatttgaatttgaacagtatattatattactcaGCATTTCCAGCATTACCATCATTACCACACCAGCCTTTGATTTGtttatgaaatattttaataagcaTATTAAACAGACTGATAGGGGAGCACACGTCAATCATAAAAGAAGATTGACATTATTATATTTGGAAAATTGAGTGACCgtattttttcgcactataagacacatcggattataaggcgcactgtcaattaacgtctattttctatctaatgctaatgctgcttcagcagtgctagctggggttagcagcaggctacaggccaataatacaaTACCTCTGAACATGGAAAGagctggtagaattcatacataaggttcaCTGAATTATTaggcacactgtcgatttttggtaaaattaaaggattttaaatgcacattATAGTGCAGGAAATACGGTATTTGTCTATGTATTCTTCCTGATCGTGCAGTATATTTAATcagcatcatcattatcattattaccaTACTCTTTTGACAGTTTTCACTAAAACACAACTAAAACATTTATGTTATTTGTATGTGTATTTGAAGTTCTAATCTAATTCTAACTCTAGCTGTTGAGTAGTGTTAGGAAATCCATAATCCATAATCAAGGTTGTTTTTCTCACTGATAAAGTGATCATTGTTGTCACCTGCACAAAAAAGCAATGACACCTGATGATGACAATGACAGTTTTTGATGTCATAATCTGTTTAACTGTTtggaaattaatattattattatagtcaaGTTGAGTCTTGATCATTgtaaactctttatttttaaacatataatcATTATTGCTAATTTTACTAATATTTAGGTGGTAAAAAGAGACCCTTAGTTGAAGAATCACCCATCACTCAAACTCTGCAGCAACCCCTTAAACGACGAGCTGTTCGTCATAAAGACTGTATGCATTCCTCAAGTCAACCATCACACATTGTCTCATTCTCTTCTCTGTACGTTTATTTTCAGACCAACTGTCCAGATACTGTCTCTCTAAAGAAGatacataaatgtttttattttttatttttagatctgACGTCTCATGCACGCGAAATCATTTCAGCATCCAGAGGCTTTTTTCATGCTGTCCGTGTTACCAGTGTCAGACCGCTGTTATCCTCAGCAGAGAACATTCCATTCATCTGGACTGATGCTCTCTCAGACCAAGGCTATAAAGTGgagagcagaagaagaaaatagaaaaaagaccTATGCACATCCTTTCGGGCACATCGGGACATTCTGGGCAACTTTCTAAACGACGTCTTTTTCAGTGAGGTGTGTCAGGTGGTCTCAGTTTCAGTTGTTGTGAGATCAGAAGGGTGTGTATTCTGGATTTGCCATTTCAGAAACATGTTGTCTGAGAGTGTTAACGTTTTATCCGAGTCGAATCGAgacgaggaggaagaggaggtgaTTTTTATTCCATATGTAACCGTTTCAGATAAAGGTGCACTCAACACTTTGCAAAATGAACTGTGTTGCAAAAAAGAAGAAGCCCCAGGTTTGGTGCATCTGCCTGGTTAGTGTACATGAGGAACTGTTTACTCTCAGACTGCCCTGTGTAAATTCCTCTGCTGACAGCTGAGCAGCTCTTCAGTATGaacagttttttaaatatatttccttTTCTGTGGTGAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231843 lncRNA downstream 164474 32240638 ~ 32244433 (-) True G171280
TU231788 lncRNA downstream 429615 31979091 ~ 31979292 (-) True G171237
TU231787 lncRNA downstream 441185 31966206 ~ 31967722 (-) True G171236
TU231783 lncRNA downstream 447333 31961281 ~ 31961574 (-) True G171232
TU231780 lncRNA downstream 448714 31957167 ~ 31960193 (-) True G171231
TU232113 lncRNA upstream 41477 32678654 ~ 32678976 (-) True G171463
XR_002651311.1 lncRNA upstream 45151 32682328 ~ 32683648 (-) True LOC111194865
TU232111 lncRNA upstream 58929 32696106 ~ 32702856 (-) True G171461
TU232130 lncRNA upstream 168460 32805637 ~ 32811201 (-) True G171479
TU232149 lncRNA upstream 276741 32913918 ~ 32931640 (-) False LOC111194944
XM_007227850.3 mRNA downstream 36526 32368375 ~ 32372381 (-) True rpl8
XM_007227854.3 mRNA downstream 85961 32304450 ~ 32322946 (-) False med14
XM_007227853.3 mRNA downstream 85961 32304450 ~ 32322946 (-) True med14
XM_007227855.3 mRNA downstream 105610 32299367 ~ 32303297 (-) True LOC103041148
XM_007227856.2 mRNA downstream 111389 32270163 ~ 32297518 (-) False LOC103041458
XM_007227824.3 mRNA upstream 62790 32699967 ~ 32745571 (-) True maob
XM_022680592.1 mRNA upstream 121330 32758507 ~ 32776018 (-) False ndp
XM_007227823.3 mRNA upstream 121330 32758507 ~ 32771966 (-) False ndp
XM_015604852.2 mRNA upstream 145203 32782380 ~ 32798126 (-) True efhc2
XM_007227822.3 mRNA upstream 145203 32782380 ~ 32798125 (-) False efhc2
TU231746 other downstream 505380 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 3721228 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 4506008 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 6503425 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 6899491 25502135 ~ 25509416 (-) False LOC111194864
TU232121 other upstream 121341 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 536876 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 577145 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 2300128 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 2584538 35221715 ~ 35222225 (-) True G172060