RNA id: XM_007227854.3


Basic Information

Item Value
RNA id XM_007227854.3
length 5037
RNA type mRNA
GC content 0.51
exon number 29
gene id med14
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 32304450 ~ 32322946 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGATGCGGAGTGTGTTTCTGCGCTCGGTGTTTCACACTGTTCCGCGGTGATGGCGGTCAGCAGCAGCGGGGGGATTTCACGGCTGATTCGGCTGCAGGATTAGATGTGATTTCCATGGGCGAGCGAacttctgcgctagaaatattgtgatttaatcTTTCCCGTTCTGAGAGCTGAAAGGACCAGCGGTGTGACTTGGCTCGGCTCTGCGCCGCTTAGTGAAAATGGCTCCGGTGCAGATCGGCTCGGATGGCCAGCTGGTGCCCGTCGGGGGTCCGACTTCAGCACCGCAGCCCCCGCCTGCCGCTCCGGCGACACAGGGGGTCAAACTTAGCGTTCTGATCGAGTTTCTGCTCCAGCGGACCTACCATGAGATTACACTGCTGGCTGAACTACTTCCACGGAAGACAGACATGGAAAGGAAAATTGAAATAGTGCAGTTTGCCAGTCGAACGCGGCAGCTCTTTGTGCGGCTGCTTGCTCTTGTGAAATGGGCCAGCAATGCTGGAAAAGTGGAGAAATGTGCGATGATTTCAGCATTTCTGGACCAGCAGGCTTTCCTGTTTGTTGACACAGCGGACCGGCTGGCATCTTTGGCCCGGGATGCGTTGGTTCATGCCCGCCTGCCCAGCTTTGCCATTCCATTTGCCATTGATGTTCTGACTACAGGGTCATATCCACGTCTTCCCACTTGCATACGGGACAAAATAATCCCTCCAGACCCGATCACCAAAGCAGAGAAGCAGACTACACTGAACCAGCTAAATCAAATCCTTCGCCATCGACTTGTCACCACTGACCTGCCCCCTCAGCTGGCCAATCTGACCGTGGCGAATGGGCGGGTAAAGTTCAGAGTGGAGGGTGAGTTTGAAGCCACGTTAACGGTGATGGGGGATGATCCAGACATTCCCTGGAGATTGCTGAAGCTTGAGATTCTGGTTGAGGACAAGGAGACAGGAGATGGTCGAGCTTTGGTGCATAGCATGCAAGTGAATTACATCCATGAGCTGGTGCAGTCCCGGCTGTTCGCAGATGAAAAGCCACTCCAGGACATGTACAGCTGCCTAcACTCTTTCTGCCTGTCCCTGCAGCTGGAGGTCCTACACTCTCAGACTCTGATGCTGATCAGAGAGCGCTGGGGGGACCTCGTTCAGGTGGAGCGCTACCTTCCTGCCAAGTGCCTCACCCTGGCTGTGTGGAATCAACAGGTTCTGGGTCGTAAGACAGGCACAGCATCCGTGCACAAAGTCAGCATCAAGATCGACGAGACGGATGGATCGAAGCCATTGCAGATTTCCCATGAGCCTCCACTGCCAGCCTGTGATTCCAGACTAATGGAAAGAGCCATGAAGATTGACCATCTCTCAGTGGAAAAGCTTTTGATCGACAGCGTTCACGCCCGCTCTCACCAGAAGCTGCAGGAACTCAAAGCCATACTGAAGAGCAGCAACCCCAGTGATAACTCGTTTATAGAGACTGCTCTTCCTACTCTGGTCATTCCAATCCTGGAGCCTTGTGGGCGTTCCGAGTGTCTTCACATATTCGTAGACTTGCACTCGGGAATGTTCCAGCCGATGCTGTATGGAATTGATCAGTCTATGTTGGATGACATTGAGAAAACCATCAATGATGACATGAAGCGCATCGTCACGTGGTTGCAGCAGCTGAAGTTTTGGTTGGGAGAGCAGAGGTGTAGGCAGTCTGTCAAGCATCTCCCCACACTGTGTACAGACACTCTGCACTTATCTAACTCCGCCTCTCACCCTGTGGGCAGCCTATCGAAACACCGTCTCTTCATCAAGCTCACTCGTCTTCCACAGTACTACATCGTGGTGGAAATGTTTGATGTGGCAAACAGCTCCACAGAGCTGCAGTATAAATACTATTTCCTGTCGGTAAGTCAGTTGGAGGGGGAGGATGGGCTGCCCTGTGCTCTGCTGCTACAGCAGTTCAAGCCCAACCTGGAGGAGCTCGTGCAGGATCTGTCTTCTGGAAGGATGCTCCGGCCTGGGACCAAGAGAAAActGTCAGGAGAGCAGGGTGCTACTGAACCTAAAAAACCCAAGCGCTCAGGAGAGATGTGTGCCTTCAACAAGGAGCTGGCCCATCTAGTAGCCATGTGTGACACAAACATGCCCCTTATTGGCCTCCGCAGTGAGCTGAGCAATATGGAGATCCCTCATCAAGGTGTCCAGGTTGAAGGAGACGGCTGTAGCCATGCTATTCGCCTTCTCAGGGTACCACCTGCTAAAGGTGTCAGTGAGGAGACGAGGAAGGCTCTGGACCGCACTCTGCTGGACTGCACCTTCAGACTGCAGGGACGCAATAATCGGACCTGGGTGGCAGAGCTGGTCTTTACCAGCTGCCCCCTCAACAGCACCTCAACTAAAGAGCAAGCCTCCACGCGGCATGTCTACTTGACGTACGAGAATCCGCTATCGGAGCCAGTGGGAGGACGGAAGGTGGTGGAGATGTTTCTGAATGACTGGAACAGCATCAGTCAactgtatgagtgtgtgctggACTTCTCTCGAGCTCTGCCTGAAATGCCCTCGTTTTTGAGCTTATTCTCTGAAATCCGGTTATATAACTACCGGAAACTGGTTCTCTGTTACGGTAACACCAAAGGCAGCTCAGTGACAATCCAGTGGAACTCCGTGACCCAGCGCTTCCACCTTGCTCTGGGTACGGTTGGACCAAACTCTGGCTGTAGCAACTGCCACAACATTATCCTCCACCAGCTTCAGGAAATGTTCAACAAGACCCCCAATGTGGTGCAGCTGTTACAGGTGCTGTCAGACACACAGGCTCCATTGAATGCCATCAACAAGCTTCCCACAGTACCCATGCTGGGTCTAACCCAGAGAACCAACACCGCCTACCAGTGCTTCTCCATCCTGCCTCAGTCACCCACCCACATCCGCCTTGCCTTCCGAAATATGTACTGCATAGACATCTACTGCCATAGCCGAGGTGTGGTGGCCATCAGAGATGGTGCTTACAGCCTCTTCGATAACACCAAGATCGTTGAGGGCTTCTATCCAGCTCCTGGACTGAAGACATTCTTGAGCATGTTTGTGGACAGCAACCAGGACGCGAGGCGACGCTCAGTCAACGAGGACGACAACCCTCCCTCGCCAGTGGGCGTGGACGTCATGGACACTCTAATGCCACACATGCAGcctcagcagccaatcagaggccaAGGGGTCTACCCTCCACTTACATCTCCACCCAATTCGTACCATGGCAACGTTGCTCCATCGCCCTCCATGATGCCAACACAGTCACCTGGAGCTCTGGACCCAAGTTCGCCATACCCAATGGTGTCTCCCAGCCAGAGGACGGGCACGTGGCCAGGCTCTCCACAGGTCTCTGGCCCATCACCTGGGGCTCGTATCCATGGCATGTCACCTGGCAACCCATCTCTTCACTCTCCCATTCCAGATGCCTCCCATTCTCCTCGTGCTGGGACCAGTTCCCAAGTGATGCCTACCAGTATGCCTCCACCTCGTAAGCTACCTCAGCGTTCATGGGCTGCCTCCATTCCCACCATCCTCACCCACAATGCCTTGCACGTGCTGTTGCTGCCCTCTCCCACAATGTGTGTGGTGCCAGGACTAGCTGGCAGCTACCTCTGCTCTCCACTGGAGCGCTTTCTGGGCTCGGTCATCATGAGGAGGCACCTGCAGAGAATCATTCAGCTGGAGCAGAACCTCACCATTGTGAACTCCAATGAGCCGGGAGTCATCATGTTCAAGACAGAGGTGCTAAAGTGTAGAGTGGCTCTTAACCCAAAGAGCTACCAGACTCTGCAGCTGAAAGTGACCCCTGAGAATGCTGGACCCTGGTCACAGGAAGAACTGCAGGTTCTGGAGAAGTTCTTTGAGACCAGAgttGCAGGACCACCCTTCAAGTATAACACTCTAAATGCCTTTACGAAGCTGCTAGGGGCTCCCACCAATATCCTCAGAGACTGTGTTCGGATAATGAAGCTTGAGTTGTTCCCCGAACAGGCGGCCCAGCTGAAATGGaatgttcagttctgtctgaCCATcccacccagtgcccctcctatTGCCCCTCCTGGAACCATTGCTGTTGTGCTCAAGACCAAGATGCTTTTCTTTCTCCAGCTGACGCAGAGGCTGCCAGTGCCTCAGGAGCCCATCAGCATCATTGTGCCCATTGTATACGACATGGCCACGGGGCTGACGCAGCAGGCTGATATCCCCCGACAGCACAGCTCCTCTGGCGCCGCAGCCCTCATGGTCAGCTCCATCCTCAGGAGATTCAACGAGCACCACCCAGCCCGACCAGGTGAATGCACCATATTTGCCTCAGTTCATGAACTCATGGCTAATCTCACACTGAATTCTGGAGGACGGCCGTAAAAAAAGAACTCGGATCTTTTCCGACCGCTTGCTGTAGGAGCATTGGAGTTCTAACCTACAGCCAATGAACATTTTTCTTCAGGTGTACAAACTTCTGTCattaaaggaagagaaaaacTGATGGATTACCTTCTGCTTTTCTATCATATAAAGagcataaataaaagaatgaaggACAGCACATCTGGGAATGTACTTCTTGAGAGTACCACGCATACTTCTACAAATTCAGGACACGATTAAGAAAAGAGGACGCTTTATTTTTGTTCAATGCACTTCTTGAATAAAGGtttgaaatgagaaaaaaggatTGTTTACCTTCAACtgtaaatttttattattttaaagtctgCCTTTAAGAAACTAAGCAGTTTGCAAaaaactttattcatttttttatattgcgaAATATCAATGCTGTTGATATTGGGGATGTATTGTTTATTATGACACTATTTAATGTCCTTTTTTATGTCATAACTTTGACCTCTCTCATTAAACCTGTCATGCTGAATACTGTTAAGCTTGTGACAGAATTTCTAAATAAGCCGTATTTTATTATGACTGCATTTGAATCGGACGTAAAAAGTAGCCTATTCTTGTCTGTCTTTATTACTGTTGAATAAACATTTGAAAATGTTA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231843 lncRNA downstream 60017 32240638 ~ 32244433 (-) True G171280
TU231788 lncRNA downstream 325158 31979091 ~ 31979292 (-) True G171237
TU231787 lncRNA downstream 336728 31966206 ~ 31967722 (-) True G171236
TU231783 lncRNA downstream 342876 31961281 ~ 31961574 (-) True G171232
TU231780 lncRNA downstream 344257 31957167 ~ 31960193 (-) True G171231
TU232113 lncRNA upstream 355708 32678654 ~ 32678976 (-) True G171463
XR_002651311.1 lncRNA upstream 359382 32682328 ~ 32683648 (-) True LOC111194865
TU232111 lncRNA upstream 373160 32696106 ~ 32702856 (-) True G171461
TU232130 lncRNA upstream 482691 32805637 ~ 32811201 (-) True G171479
TU232149 lncRNA upstream 590972 32913918 ~ 32931640 (-) False LOC111194944
XM_007227855.3 mRNA downstream 1153 32299367 ~ 32303297 (-) True LOC103041148
XM_007227856.2 mRNA downstream 6932 32270163 ~ 32297518 (-) False LOC103041458
XM_022680571.1 mRNA downstream 8368 32269539 ~ 32296082 (-) True LOC103041458
XM_007227861.3 mRNA downstream 152651 32139573 ~ 32151799 (-) True LOC103042484
XM_007227873.3 mRNA downstream 362237 31932391 ~ 31942213 (-) True LOC103045951
XM_007227850.3 mRNA upstream 45429 32368375 ~ 32372381 (-) True rpl8
XM_022680590.1 mRNA upstream 85961 32408907 ~ 32637177 (-) False cask
XM_022680582.1 mRNA upstream 85961 32408907 ~ 32637177 (-) False cask
XM_022680588.1 mRNA upstream 85961 32408907 ~ 32637177 (-) False cask
XM_022680585.1 mRNA upstream 85961 32408907 ~ 32637177 (-) False cask
TU231746 other downstream 400923 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 3616771 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 4401551 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 6398968 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 6795034 25502135 ~ 25509416 (-) False LOC111194864
TU232121 other upstream 435572 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 851107 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 891376 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 2614359 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 2898769 35221715 ~ 35222225 (-) True G172060

Expression Profile