RNA id: XM_007227861.3


Basic Information

Item Value
RNA id XM_007227861.3
length 3210
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC103042484
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 32139573 ~ 32151799 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atacactaacacacacatacatacacacacatcaactctctctctcactctcactcacacacacacacccctaaaaccccaccccaccccgcGCTACAGGGCCGCTTTAAAGTGGAATCCGTGGATGAGCAGACACTCTCCAGCCATGGAGGAGCTCACGGCGTTTGTGTCCAAGTCCTTCGACCAGAAAACCAAGGAGAGCACTAAGGACGGCATCACGTACCGGGAGGTGCTGGAGAGCGGCTTGGCCAGAGCCAGGGAGCTGGGAAACTCGGAGAGCAACCTGCAGGACATTACTGAGGCCACCAACCACTGTCCGGTGCATCTGTTCAAGGAGCACGTCGAGCTGGAGAAGGAGAAGCTGAAGGAGTTCAGCGCGGCGAGAGCTGCTGAGGGGATCTATGAGTGcaaggagaagaaggaggatgTGAAGTCTGAGGATGAGGACGCACAGGGGAAGCTGAAGCAGAGGAGGAGCAGGACGAACTTCACTCTGGAGCAGCTGAACGAGCTCGAGCGGCTCTTCGACGAGACGCATTACCCGGACGCCTTCATGAGGGAAGAGCTGAGCCAGAGGCTGGGGTTGTCCGAGGCCAGAGTCCAGGTTTGGTTTCAGAACAGAAGAGCGAAATGTCGGAAACAGGAGAATCAGATGCACAAAGGGGTGATCCTGGGCTCAGCCAGCCATCTGGACGCGTGCAGAGTGGCTCCGTACGTCAATATGGGGGCTCTGAGGATGCCTTTCCAACAGGTTCAGGCCCAGCTACAGTTGGAAGGGGTGACCCACTCACACCCTCACCTGCACCCGCACCTGGCAGCGCACGCCCCGTACCTGATGTTCCCTCCTCCGCCCTTCGGACTGCCCATTGCCTCGCTGGCGGACTCGGCATCAGCTGCAGCCGCTGTGGCGGCGGCGGCCAAGAGCAACAGCAAGAACTCCAGCATCGCCGACCTACGACTCAAGGCAGGACTGCTTGGAGGCCACTGGCTCAGCCCTTTCCAGGCACAGATCACAGCCCCAGGACCGTACAAAAATGTCTGGATGTCTGTCTGAAAACCAGCGGTTAGTGGCGGAGACTcttagcaaaaaaacaaaacaaaaaaagtgaaaagaaaaaaaaaagaaagagctaAAGGCAGACTCAGTGTGGCTAGTGGCTCTCAGAGTGGCTCTCAGGCACTCTAAAAGTTTCGGACTCTCGACCTCAGCGAGAAACGAGCACCGGGCCGCGCTCGCCTCCGACCACTGTgttggttttgttttgtgtgcCGCTGCCGCAGAGTGCATGTGTTCAGACGGAAGGATAGCTCTGCTGGGGCTGGCCTCCATTGTAACTGACATTCACCCAACTTTGTTGATCACTGCCATGACAGCCTCCCACTATAATCCGCACCTAGACTCGATATGTagtttttgattttgattttgtttctttcttattttctttcttccaCCATGGACACCGATGGGAAGCAGCGCTCACTCCAAGGGTACAGTCATCAGTTTTCAGAGAAATTCACCTGCTCATtacttgttttagttttttttggagGAAATGCTCTGTTGCTGTATATTTCCTCCTGGGCGTGAGTCAGACGGACTTTCATAACTTTTATTTGCATCATTtctgcttgtattttttttgttggtctttTGTGACGTGTCCTGGGATTAGAAGTGAAACTAGCTTTTGCACTTCAGGTCTTGCATCAAGGTGTTTACAATCCTTCCTGCAAGAAAATACTACTTCTATATAAGGGGGTGGAAAATATGGACTTAATTGGGGTCtcatctttaaaaataatgcattgataataatgacattttttttcaaaagggTTAACTGcaattttgtaatttaaagaGTTACAGAAACATCAGTTTAACTGAAATGCAACTATGTGCAGTTAAGTGCAATActgtaaatatgaaaaataaaaaaacaaatagcagTTGATGTTTGCTaatcaacaaacatttttttttttctggcactGATATCAATGTGTTCtgagtttctttcttttcatcccCACAGATACATTTGTTTCTGGGCTGTGTAAATGAGAAGTTGCTGACTCATGACTCTCTGCAGAGATGTGTGTACTCACACAGGGTTTGAGGCATCAGTGTAACACAGAGATAGAGGAAgcaaaataattaatatctgtacaaaataaatctgtacaaaaatacaatacaaaaatgaCAGCTGCTTTCTggctgcactgcactgtccaccaAAGACGCAAAGACCACCCTTAAGAACAGTGTGTTTAATAACCACAGCATGAGTTAAATATCTGAAGcttctgaatcatttacattatcTGACCGTTAAACatagtcatgttttttttaactcacaCTGAAACAAAAACAGGCTATTAACCTTTATATTGGTATAAATTGGTTAGAATTTGACCTGATTTAGGTTTGTTTGAAAGGCTGTTGTTTGTAACAGATTGCTGTCAGTTTCAGTATGAATTGCCTTTGAACTAGTAGATCCTAGTTAGGTCTACCTCTACAATAAATGCTACATTGTGGGAtgcttttctgttttgttggttttgttgcttttatggttttgttttatggtttggttttatttaaagtttttttttttttttggttgttgttCACTACcattagggttttttttttaggaatttttCAGTTTGTTTAATTGAGGTCataggtgtttttatttattattttatcggaaagtttattattaaatgttaaatggtcTGATTTCacttgtacatttttacatgttttggcatttatttttctatactttttTCAATGCTAACATTTGCAACCGTTTGAAGTGAAACGTGTGACTGCAGAACATTATGTTTGACTAAAAATGTAGCGTGTCCGAGTTTACAAACATTTCAGGGACGGTGGATAAAAATCATACAACCTTTGTGTTGAGATTTTCTTGATGCTCCATGGAATTTGTTGTATCCCATTATAAATTGACATTTCATACGCAAGCATGCCCAAACATGATTCGCCACTGAGTTTGTAAGTTTTATTTTCCTTCTGttgtttcacaaaaaaaaagaatgtacatCTTGTACGAGTAAACTATCAATAAagttataaatatttgtaataggggtttataatgttttatggcccTCTGAAATTTTACGAATAAAGGTTTCTCTGTTTCACAAAAGCCTGCACTTCCGGAAACA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09331 SHOX; short stature homeobox protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231788 lncRNA downstream 160281 31979091 ~ 31979292 (-) True G171237
TU231787 lncRNA downstream 171851 31966206 ~ 31967722 (-) True G171236
TU231783 lncRNA downstream 177999 31961281 ~ 31961574 (-) True G171232
TU231780 lncRNA downstream 179380 31957167 ~ 31960193 (-) True G171231
TU231779 lncRNA downstream 182872 31955818 ~ 31956701 (-) True G171230
TU231843 lncRNA upstream 88839 32240638 ~ 32244433 (-) True G171280
TU232113 lncRNA upstream 526855 32678654 ~ 32678976 (-) True G171463
XR_002651311.1 lncRNA upstream 530529 32682328 ~ 32683648 (-) True LOC111194865
TU232111 lncRNA upstream 544307 32696106 ~ 32702856 (-) True G171461
TU232130 lncRNA upstream 653838 32805637 ~ 32811201 (-) True G171479
XM_007227873.3 mRNA downstream 197360 31932391 ~ 31942213 (-) True LOC103045951
XM_007227874.3 mRNA downstream 199336 31932391 ~ 31940237 (-) False LOC103045951
XM_022680564.1 mRNA downstream 227170 31904269 ~ 31912403 (-) True LOC103043487
XM_022680563.1 mRNA downstream 235405 31895832 ~ 31904168 (-) False gabpa
XM_022680561.1 mRNA downstream 235405 31895832 ~ 31904168 (-) False gabpa
XM_022680571.1 mRNA upstream 117740 32269539 ~ 32296082 (-) True LOC103041458
XM_007227856.2 mRNA upstream 118364 32270163 ~ 32297518 (-) False LOC103041458
XM_007227855.3 mRNA upstream 147568 32299367 ~ 32303297 (-) True LOC103041148
XM_007227854.3 mRNA upstream 152651 32304450 ~ 32322946 (-) False med14
XM_007227853.3 mRNA upstream 152651 32304450 ~ 32322946 (-) True med14
TU231746 other downstream 236046 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 3451894 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 4236674 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 6234091 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 6630157 25502135 ~ 25509416 (-) False LOC111194864
TU232121 other upstream 606719 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 1022254 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 1062523 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 2785506 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 3069916 35221715 ~ 35222225 (-) True G172060

Expression Profile