RNA id: XM_007227874.3


Basic Information

Item Value
RNA id XM_007227874.3
length 2493
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC103045951
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 31932391 ~ 31942213 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctagctaagctagtgAGCTATGCCAACAAAACCCCAGGACCCAAGAAGGCATACTCCTTTGTGAACATTTGGCTCCGATTCTCTAGTTAGACCAAGCCTTTGCTCCTCTTCCCCAAGGATCATGGCCAAAGatGCTGATCTGATTGAGGCCAATGGGGAGCTGAAAGTTTTCATAGACCAGAATCTGAGCCCTGGAAAAGGAGTTTTGTCTTTAGTGACTGTACATCCACAGTCAGTTGGAGTGGGAAAACAACTGTTACCAAAAACACTGGGTCCTTCCAATGTCAACATTGCTCCACAGATGGTCATTGGGACACCCCAGAGGCCGAGTGGCTCCAATGTGCTTCTTATGAACAGCCCCCACACACCCAGTTCTCAGTTTATCACTCAGAGCCAGCCCCCTGATGCCTCGCCATGGTCCTCGGGGAAGAGGAGTAAGAAAGGGGATAAGAATGGGAAAGGTCTGAGGCATTTCTCTATGAAGGTTTGTGAGAAGGTGCAAAGGAAGGGTGTCACCACATACAACGAAGTAGCAGATGAGCTGGTGGCTGAATTCAGCTCTGGTGACAATCACATCTCCCCAAATGAAGCGCACGTATATGATCAGAAGAATATCCGGCGGCGGGTGTATGATGCCCTGAATGTGCTGATGGCCATGAACATAATCtcaaaagagaagaaagagatcaAGTGGATCGGACTCCCCACTAACTCTGCTCAGGAGTGTCAGAACCTAGAGGTGGAGAGACAAAGACGTTTGGAgagaattaaacaaaaacagtcACAGCTCCAAGAGCTCATTTTACAGCAAATTGCCTTTAAGAACCTTGTGCAGCGTAACCGTCAGTCAGAGCAGCAAACAAACAGGCCGCCAGCGGACAATTCAGTCATTCACCTGCCTTTCATCATCATAAACACCAGCAAGAAAACAGTCATAGACTGCAGCATCTCCAATGACAAGTTTGAGTACCTCTTCAACTTTGACAGTATGTTTGAGATCCATGATGACATTGAGGTATTAAAGCGCATGGGCATGGCGTGTGGGTTGGAGGTGGGCAAATGCTCTGCAGAAGACTTAAAAGTCGCCAGGAGTCTTGTGCCCAAAGCACTAGAGCCTTATGTTACAGAGATGGCACAAGGCCCGATCAGTAATGTCTACATGATGGGGGCATCATCCACTAATGGGAGTCGTTTTCATGTTGGCAGTGATAGTGGAGCAGACGGAACGATGGCCTCCAGCTCCAACGATTCACACTACAGTGGTTCTCGCGTGGAAACCCCAGTCTCTTATATGGGAGACGATGATGACGACGAGGAATACGATGAGAACGACGATGAGGACTAACTCTTGCATCTTCACTTCGTTGTCTGCAATTCTTCTGGAGGCGGTCTTCAAGGGATTTATCAGTCACGCAAGTTCCCTCTCCCCTTCTTCTAGCACACCTAGATTATCTCCCTTTTTATCTCTGATACGGGCATTGAAGAGCATGGACTTTAAAGGGGTGAGTTGTTTTCATCCTGCTCTTTCTGCTGTATGGCTTTTCCTGTTAAATCACGACACTGCGTTTGGTGCTAGCGCAGATCATTTGATCCTGCTGGGTCAAGTTTTCAACAGAAGGACTTTTAAGGTGAGTCACTTTGAAGTAGCAGCAGTCTGCCATTCGGCCTCCACTCGGATTAGCACAACTCATTGGATCCTTCCTCGCAGCCTTGCGAAGAAAACCCTGTCTCTCTCAACCAGCCCACCACCTGCTGCTGGAGAATGTGTAGTTTGACCTCTGTGTGAAATAGTTAGGCTATCTCctttttgatttgtatttttccCCTGGAAAGTGCTGGCTTCATTCACATTTGGAAAATTCAAGATGGCTGTCTCCTTGACTCCAAGAATCTGCACAGCCAGCTGCCATTTTGCCCCATTGGGGCATGTCTTTGGATCTACGGACAATTTTTTCGTATGATTGGATGAATTAATGGCTTTCTTTTGTAGATTTCccgtatgtgtgtttgtgtgcgtgtgtatgattgtgtgtatgtgtgtgaatgtgtgtttggctTCCTGTTATTCTGTGGGCAGCTGTTTTAGGGAGTTCTTTTGaagagccattttttttttctttctcttatttgAGCTTTAGAGGTGAACTTCTGTTGTTCGCTCTACGCATTTTACAACTGACCGGCATCAGGTatctaaaaaaactttattaccCACTGAAATTTATAGGAAATTGAGGTACTTTGTTTGCATAATGTATCAGAACCTCTGAAGATTAGTTTGTAGAATCCTCCTCTCCAGGTCAGTAACACTACGGAGTATGTGTGTATGATTTATTCATGTGTATCCCAGTGTGGGATACAGGTTTGTTTGGGCTCCCATtggaaatctttaaaaaaagagagaagaaactGTTGTACTGACTCCACAAAAGTAACTTTTCTGTAACCTAATATAAGTTtggaaattaaaatataatgttttaaaaaaatgaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231747 lncRNA downstream 36873 31836759 ~ 31895518 (-) True G171209
XR_002651389.1 lncRNA downstream 62919 31868559 ~ 31869472 (-) True LOC111194941
TU231731 lncRNA downstream 216101 31715983 ~ 31716290 (-) True G171195
TU231730 lncRNA downstream 220910 31711109 ~ 31711481 (-) True G171194
TU231729 lncRNA downstream 261625 31670557 ~ 31670766 (-) True G171193
TU231779 lncRNA upstream 15581 31955818 ~ 31956701 (-) True G171230
TU231780 lncRNA upstream 16930 31957167 ~ 31960193 (-) True G171231
TU231783 lncRNA upstream 21044 31961281 ~ 31961574 (-) True G171232
TU231787 lncRNA upstream 25969 31966206 ~ 31967722 (-) True G171236
TU231788 lncRNA upstream 38854 31979091 ~ 31979292 (-) True G171237
XM_022680564.1 mRNA downstream 19988 31904269 ~ 31912403 (-) True LOC103043487
XM_022680563.1 mRNA downstream 28223 31895832 ~ 31904168 (-) False gabpa
XM_022680561.1 mRNA downstream 28223 31895832 ~ 31904168 (-) False gabpa
XM_022680562.1 mRNA downstream 29234 31895832 ~ 31903157 (-) True gabpa
XM_007227885.3 mRNA downstream 677984 31244773 ~ 31254407 (-) True LOC103022864
XM_007227861.3 mRNA upstream 199336 32139573 ~ 32151799 (-) True LOC103042484
XM_022680571.1 mRNA upstream 329302 32269539 ~ 32296082 (-) True LOC103041458
XM_007227856.2 mRNA upstream 329926 32270163 ~ 32297518 (-) False LOC103041458
XM_007227855.3 mRNA upstream 359130 32299367 ~ 32303297 (-) True LOC103041148
XM_007227854.3 mRNA upstream 364213 32304450 ~ 32322946 (-) False med14
TU231746 other downstream 28864 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 3244712 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 4029492 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 6026909 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 6422975 25502135 ~ 25509416 (-) False LOC111194864
TU232121 other upstream 818281 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 1233816 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 1274085 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 2997068 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 3281478 35221715 ~ 35222225 (-) True G172060

Expression Profile